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EIF1B (eukaryotic translation initiation factor 1B)

Identity

Alias_symbol (synonym)GC20
Other alias
HGNC (Hugo) EIF1B
LocusID (NCBI) 10289
Atlas_Id 62770
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 40351173 and ends at 40353915 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
EIF1B (3p22.1) / EIF1B (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EIF1B   30792
Cards
Entrez_Gene (NCBI)EIF1B  10289  eukaryotic translation initiation factor 1B
AliasesGC20
GeneCards (Weizmann)EIF1B
Ensembl hg19 (Hinxton)ENSG00000114784 [Gene_View]  chr3:40351173-40353915 [Contig_View]  EIF1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000114784 [Gene_View]  chr3:40351173-40353915 [Contig_View]  EIF1B [Vega]
ICGC DataPortalENSG00000114784
TCGA cBioPortalEIF1B
AceView (NCBI)EIF1B
Genatlas (Paris)EIF1B
WikiGenes10289
SOURCE (Princeton)EIF1B
Genetics Home Reference (NIH)EIF1B
Genomic and cartography
GoldenPath hg19 (UCSC)EIF1B  -     chr3:40351173-40353915 +  3p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EIF1B  -     3p22.1   [Description]    (hg38-Dec_2013)
EnsemblEIF1B - 3p22.1 [CytoView hg19]  EIF1B - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIEIF1B [Mapview hg19]  EIF1B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA521449 AF064607 AF077052 AF263452 AK223448
RefSeq transcript (Entrez)NM_005875
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)EIF1B
Cluster EST : UnigeneHs.315230 [ NCBI ]
CGAP (NCI)Hs.315230
Alternative Splicing GalleryENSG00000114784
Gene ExpressionEIF1B [ NCBI-GEO ]   EIF1B [ EBI - ARRAY_EXPRESS ]   EIF1B [ SEEK ]   EIF1B [ MEM ]
Gene Expression Viewer (FireBrowse)EIF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10289
GTEX Portal (Tissue expression)EIF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60739   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60739  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60739
Splice isoforms : SwissVarO60739
PhosPhoSitePlusO60739
Domaine pattern : Prosite (Expaxy)SUI1 (PS50296)   
Domains : Interpro (EBI)SUI1_euk    TIF_SUI1   
Domain families : Pfam (Sanger)SUI1 (PF01253)   
Domain families : Pfam (NCBI)pfam01253   
Conserved Domain (NCBI)EIF1B
DMDM Disease mutations10289
Blocks (Seattle)EIF1B
SuperfamilyO60739
Human Protein AtlasENSG00000114784
Peptide AtlasO60739
HPRD17032
IPIIPI00031489   
Protein Interaction databases
DIP (DOE-UCLA)O60739
IntAct (EBI)O60739
FunCoupENSG00000114784
BioGRIDEIF1B
STRING (EMBL)EIF1B
ZODIACEIF1B
Ontologies - Pathways
QuickGOO60739
Ontology : AmiGOtranslation initiation factor activity  cellular_component  translational initiation  regulation of translational initiation  poly(A) RNA binding  
Ontology : EGO-EBItranslation initiation factor activity  cellular_component  translational initiation  regulation of translational initiation  poly(A) RNA binding  
Pathways : KEGGRNA transport   
NDEx NetworkEIF1B
Atlas of Cancer Signalling NetworkEIF1B
Wikipedia pathwaysEIF1B
Orthology - Evolution
OrthoDB10289
GeneTree (enSembl)ENSG00000114784
Phylogenetic Trees/Animal Genes : TreeFamEIF1B
HOVERGENO60739
HOGENOMO60739
Homologs : HomoloGeneEIF1B
Homology/Alignments : Family Browser (UCSC)EIF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIF1B
dbVarEIF1B
ClinVarEIF1B
1000_GenomesEIF1B 
Exome Variant ServerEIF1B
ExAC (Exome Aggregation Consortium)EIF1B (select the gene name)
Genetic variants : HAPMAP10289
Genomic Variants (DGV)EIF1B [DGVbeta]
DECIPHER (Syndromes)3:40351173-40353915  ENSG00000114784
CONAN: Copy Number AnalysisEIF1B 
Mutations
ICGC Data PortalEIF1B 
TCGA Data PortalEIF1B 
Broad Tumor PortalEIF1B
OASIS PortalEIF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEIF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEIF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EIF1B
DgiDB (Drug Gene Interaction Database)EIF1B
DoCM (Curated mutations)EIF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EIF1B (select a term)
intoGenEIF1B
Cancer3DEIF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEIF1B
Genetic Testing Registry EIF1B
NextProtO60739 [Medical]
TSGene10289
GENETestsEIF1B
Huge Navigator EIF1B [HugePedia]
snp3D : Map Gene to Disease10289
BioCentury BCIQEIF1B
ClinGenEIF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10289
Chemical/Pharm GKB GenePA143485452
Clinical trialEIF1B
Miscellaneous
canSAR (ICR)EIF1B (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEIF1B
EVEXEIF1B
GoPubMedEIF1B
iHOPEIF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:40 CET 2017

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