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EIF3CL (eukaryotic translation initiation factor 3 subunit C like)

Identity

Alias_nameseukaryotic translation initiation factor 3, subunit C-like
Other alias-
HGNC (Hugo) EIF3CL
LocusID (NCBI) 728689
Atlas_Id 62779
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 28379582 and ends at 28403885 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF3CL (16p11.2) / MED24 (17q21.1)EIF3CL (16p11.2) / SETD3 (14q32.2)ESYT2 (7q36.3) / EIF3CL (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EIF3CL   26347
Cards
Entrez_Gene (NCBI)EIF3CL  728689  eukaryotic translation initiation factor 3 subunit C like
Aliases
GeneCards (Weizmann)EIF3CL
Ensembl hg19 (Hinxton)ENSG00000205609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205609 [Gene_View]  chr16:28379582-28403885 [Contig_View]  EIF3CL [Vega]
ICGC DataPortalENSG00000205609
TCGA cBioPortalEIF3CL
AceView (NCBI)EIF3CL
Genatlas (Paris)EIF3CL
WikiGenes728689
SOURCE (Princeton)EIF3CL
Genetics Home Reference (NIH)EIF3CL
Genomic and cartography
GoldenPath hg38 (UCSC)EIF3CL  -     chr16:28379582-28403885 -  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EIF3CL  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblEIF3CL - 16p12.1 [CytoView hg19]  EIF3CL - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIEIF3CL [Mapview hg19]  EIF3CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ686089 DA645577 DC410988
RefSeq transcript (Entrez)NM_001099661 NM_001317856 NM_001317857
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EIF3CL
Cluster EST : UnigeneHs.567374 [ NCBI ]
CGAP (NCI)Hs.567374
Alternative Splicing GalleryENSG00000205609
Gene ExpressionEIF3CL [ NCBI-GEO ]   EIF3CL [ EBI - ARRAY_EXPRESS ]   EIF3CL [ SEEK ]   EIF3CL [ MEM ]
Gene Expression Viewer (FireBrowse)EIF3CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728689
GTEX Portal (Tissue expression)EIF3CL
Protein : pattern, domain, 3D structure
UniProt/SwissProtB5ME19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB5ME19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB5ME19
Splice isoforms : SwissVarB5ME19
PhosPhoSitePlusB5ME19
Domains : Interpro (EBI)EIF3C    EIF3C_N_dom    PCI_dom    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)eIF-3c_N (PF05470)    PCI (PF01399)   
Domain families : Pfam (NCBI)pfam05470    pfam01399   
Domain families : Smart (EMBL)PINT (SM00088)  
Conserved Domain (NCBI)EIF3CL
DMDM Disease mutations728689
Blocks (Seattle)EIF3CL
SuperfamilyB5ME19
Human Protein AtlasENSG00000205609
Peptide AtlasB5ME19
IPIIPI00016910   IPI00873286   IPI01009614   IPI01013710   IPI01011218   IPI01013816   IPI00646839   
Protein Interaction databases
DIP (DOE-UCLA)B5ME19
IntAct (EBI)B5ME19
FunCoupENSG00000205609
BioGRIDEIF3CL
STRING (EMBL)EIF3CL
ZODIACEIF3CL
Ontologies - Pathways
QuickGOB5ME19
Ontology : AmiGOtranslation initiation factor activity  eukaryotic translation initiation factor 3 complex  translational initiation  translation initiation factor binding  
Ontology : EGO-EBItranslation initiation factor activity  eukaryotic translation initiation factor 3 complex  translational initiation  translation initiation factor binding  
Pathways : KEGGRNA transport   
NDEx NetworkEIF3CL
Atlas of Cancer Signalling NetworkEIF3CL
Wikipedia pathwaysEIF3CL
Orthology - Evolution
OrthoDB728689
GeneTree (enSembl)ENSG00000205609
Phylogenetic Trees/Animal Genes : TreeFamEIF3CL
HOVERGENB5ME19
HOGENOMB5ME19
Homologs : HomoloGeneEIF3CL
Homology/Alignments : Family Browser (UCSC)EIF3CL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIF3CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIF3CL
dbVarEIF3CL
ClinVarEIF3CL
1000_GenomesEIF3CL 
Exome Variant ServerEIF3CL
ExAC (Exome Aggregation Consortium)EIF3CL (select the gene name)
Genetic variants : HAPMAP728689
Genomic Variants (DGV)EIF3CL [DGVbeta]
DECIPHEREIF3CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEIF3CL 
Mutations
ICGC Data PortalEIF3CL 
TCGA Data PortalEIF3CL 
Broad Tumor PortalEIF3CL
OASIS PortalEIF3CL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEIF3CL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEIF3CL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EIF3CL
DgiDB (Drug Gene Interaction Database)EIF3CL
DoCM (Curated mutations)EIF3CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EIF3CL (select a term)
intoGenEIF3CL
Cancer3DEIF3CL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEIF3CL
Genetic Testing Registry EIF3CL
NextProtB5ME19 [Medical]
TSGene728689
GENETestsEIF3CL
Target ValidationEIF3CL
Huge Navigator EIF3CL [HugePedia]
snp3D : Map Gene to Disease728689
BioCentury BCIQEIF3CL
ClinGenEIF3CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728689
Chemical/Pharm GKB GenePA162384693
Clinical trialEIF3CL
Miscellaneous
canSAR (ICR)EIF3CL (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEIF3CL
EVEXEIF3CL
GoPubMedEIF3CL
iHOPEIF3CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:58 CEST 2017

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