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EIF3J (eukaryotic translation initiation factor 3 subunit J)

Identity

Alias_namesEIF3S1
eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa
eukaryotic translation initiation factor 3, subunit J
Alias_symbol (synonym)eIF3-p35
eIF3-alpha
eIF3j
Other alias
HGNC (Hugo) EIF3J
LocusID (NCBI) 8669
Atlas_Id 53463
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 44537068 and ends at 44562803 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EIF3J (15q21.1) / EIF3J (15q21.1)MALAT1 (11q13.1) / EIF3J (15q21.1)SPG11 (15q21.1) / EIF3J (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EIF3J   3270
Cards
Entrez_Gene (NCBI)EIF3J  8669  eukaryotic translation initiation factor 3 subunit J
AliasesEIF3S1; eIF3-alpha; eIF3-p35
GeneCards (Weizmann)EIF3J
Ensembl hg19 (Hinxton)ENSG00000104131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104131 [Gene_View]  chr15:44537068-44562803 [Contig_View]  EIF3J [Vega]
ICGC DataPortalENSG00000104131
TCGA cBioPortalEIF3J
AceView (NCBI)EIF3J
Genatlas (Paris)EIF3J
WikiGenes8669
SOURCE (Princeton)EIF3J
Genetics Home Reference (NIH)EIF3J
Genomic and cartography
GoldenPath hg38 (UCSC)EIF3J  -     chr15:44537068-44562803 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EIF3J  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblEIF3J - 15q21.1 [CytoView hg19]  EIF3J - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIEIF3J [Mapview hg19]  EIF3J [Mapview hg38]
OMIM603910   
Gene and transcription
Genbank (Entrez)AF090923 AK002006 AK023388 AK300659 AL536561
RefSeq transcript (Entrez)NM_001284335 NM_001284336 NM_003758
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EIF3J
Cluster EST : UnigeneHs.404056 [ NCBI ]
CGAP (NCI)Hs.404056
Alternative Splicing GalleryENSG00000104131
Gene ExpressionEIF3J [ NCBI-GEO ]   EIF3J [ EBI - ARRAY_EXPRESS ]   EIF3J [ SEEK ]   EIF3J [ MEM ]
Gene Expression Viewer (FireBrowse)EIF3J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8669
GTEX Portal (Tissue expression)EIF3J
Human Protein AtlasENSG00000104131-EIF3J [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75822   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75822  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75822
Splice isoforms : SwissVarO75822
PhosPhoSitePlusO75822
Domains : Interpro (EBI)eIF3-like_dom    eIF3j   
Domain families : Pfam (Sanger)eIF3_subunit (PF08597)   
Domain families : Pfam (NCBI)pfam08597   
Conserved Domain (NCBI)EIF3J
DMDM Disease mutations8669
Blocks (Seattle)EIF3J
PDB (SRS)2KRB    3BPJ   
PDB (PDBSum)2KRB    3BPJ   
PDB (IMB)2KRB    3BPJ   
PDB (RSDB)2KRB    3BPJ   
Structural Biology KnowledgeBase2KRB    3BPJ   
SCOP (Structural Classification of Proteins)2KRB    3BPJ   
CATH (Classification of proteins structures)2KRB    3BPJ   
SuperfamilyO75822
Human Protein Atlas [tissue]ENSG00000104131-EIF3J [tissue]
Peptide AtlasO75822
HPRD04883
IPIIPI00290461   IPI00910728   IPI01014572   IPI01015040   
Protein Interaction databases
DIP (DOE-UCLA)O75822
IntAct (EBI)O75822
FunCoupENSG00000104131
BioGRIDEIF3J
STRING (EMBL)EIF3J
ZODIACEIF3J
Ontologies - Pathways
QuickGOO75822
Ontology : AmiGOtranslation initiation factor activity  protein binding  cytosol  eukaryotic translation initiation factor 3 complex  translational initiation  translational initiation  
Ontology : EGO-EBItranslation initiation factor activity  protein binding  cytosol  eukaryotic translation initiation factor 3 complex  translational initiation  translational initiation  
Pathways : KEGGRNA transport   
NDEx NetworkEIF3J
Atlas of Cancer Signalling NetworkEIF3J
Wikipedia pathwaysEIF3J
Orthology - Evolution
OrthoDB8669
GeneTree (enSembl)ENSG00000104131
Phylogenetic Trees/Animal Genes : TreeFamEIF3J
HOVERGENO75822
HOGENOMO75822
Homologs : HomoloGeneEIF3J
Homology/Alignments : Family Browser (UCSC)EIF3J
Gene fusions - Rearrangements
Tumor Fusion PortalEIF3J
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIF3J [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIF3J
dbVarEIF3J
ClinVarEIF3J
1000_GenomesEIF3J 
Exome Variant ServerEIF3J
ExAC (Exome Aggregation Consortium)ENSG00000104131
GNOMAD BrowserENSG00000104131
Genetic variants : HAPMAP8669
Genomic Variants (DGV)EIF3J [DGVbeta]
DECIPHEREIF3J [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEIF3J 
Mutations
ICGC Data PortalEIF3J 
TCGA Data PortalEIF3J 
Broad Tumor PortalEIF3J
OASIS PortalEIF3J [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEIF3J  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEIF3J
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EIF3J
DgiDB (Drug Gene Interaction Database)EIF3J
DoCM (Curated mutations)EIF3J (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EIF3J (select a term)
intoGenEIF3J
Cancer3DEIF3J(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603910   
Orphanet
DisGeNETEIF3J
MedgenEIF3J
Genetic Testing Registry EIF3J
NextProtO75822 [Medical]
TSGene8669
GENETestsEIF3J
Target ValidationEIF3J
Huge Navigator EIF3J [HugePedia]
snp3D : Map Gene to Disease8669
BioCentury BCIQEIF3J
ClinGenEIF3J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8669
Chemical/Pharm GKB GenePA162384902
Clinical trialEIF3J
Miscellaneous
canSAR (ICR)EIF3J (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEIF3J
EVEXEIF3J
GoPubMedEIF3J
iHOPEIF3J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:11:47 CET 2017

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