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EIF5AL1 (eukaryotic translation initiation factor 5A like 1)

Identity

Alias (NCBI)EIF5A
EIF5AP1
bA342M3.3
eIF-4D
eIF-5A
eIF-5A-1
eIF-5A1
HGNC (Hugo) EIF5AL1
HGNC Alias symbbA342M3.3
HGNC Previous nameEIF5AP1
HGNC Previous nameeukaryotic translation initiation factor 5A pseudogene 1
LocusID (NCBI) 143244
Atlas_Id 58326
Location 10q22.3  [Link to chromosome band 10q22]
Location_base_pair Starts at 79512601 and ends at 79516436 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)EIF5AL1   17419
Cards
Entrez_Gene (NCBI)EIF5AL1    eukaryotic translation initiation factor 5A like 1
AliasesEIF5A; EIF5AP1; bA342M3.3; eIF-4D; 
eIF-5A; eIF-5A-1; eIF-5A1
GeneCards (Weizmann)EIF5AL1
Ensembl hg19 (Hinxton)ENSG00000253626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253626 [Gene_View]  ENSG00000253626 [Sequence]  chr10:79512601-79516436 [Contig_View]  EIF5AL1 [Vega]
ICGC DataPortalENSG00000253626
TCGA cBioPortalEIF5AL1
AceView (NCBI)EIF5AL1
Genatlas (Paris)EIF5AL1
SOURCE (Princeton)EIF5AL1
Genetics Home Reference (NIH)EIF5AL1
Genomic and cartography
GoldenPath hg38 (UCSC)EIF5AL1  -     chr10:79512601-79516436 +  10q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EIF5AL1  -     10q22.3   [Description]    (hg19-Feb_2009)
GoldenPathEIF5AL1 - 10q22.3 [CytoView hg19]  EIF5AL1 - 10q22.3 [CytoView hg38]
ImmunoBaseENSG00000253626
Genome Data Viewer NCBIEIF5AL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC070048
RefSeq transcript (Entrez)NM_001099692
Consensus coding sequences : CCDS (NCBI)EIF5AL1
Gene ExpressionEIF5AL1 [ NCBI-GEO ]   EIF5AL1 [ EBI - ARRAY_EXPRESS ]   EIF5AL1 [ SEEK ]   EIF5AL1 [ MEM ]
Gene Expression Viewer (FireBrowse)EIF5AL1 [ Firebrowse - Broad ]
GenevisibleExpression of EIF5AL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143244
GTEX Portal (Tissue expression)EIF5AL1
Human Protein AtlasENSG00000253626-EIF5AL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IS14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IS14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IS14
PhosPhoSitePlusQ6IS14
Domaine pattern : Prosite (Expaxy)IF5A_HYPUSINE (PS00302)   
Domains : Interpro (EBI)IF5A-like    NA-bd_OB-fold    Rib_L2_dom2    Trans_elong_IF5A_hypusine_site    Transl_elong_IF5A_C    Translation_prot_SH3-like_sf   
Domain families : Pfam (Sanger)eIF-5a (PF01287)   
Domain families : Pfam (NCBI)pfam01287   
Domain families : Smart (EMBL)eIF-5a (SM01376)  
Conserved Domain (NCBI)EIF5AL1
SuperfamilyQ6IS14
AlphaFold pdb e-kbQ6IS14   
Human Protein Atlas [tissue]ENSG00000253626-EIF5AL1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q6IS14
IntAct (EBI)Q6IS14
BioGRIDEIF5AL1
STRING (EMBL)EIF5AL1
ZODIACEIF5AL1
Ontologies - Pathways
QuickGOQ6IS14
Ontology : AmiGOtranslation elongation factor activity  nuclear pore  endoplasmic reticulum membrane  translational elongation  protein transport  ribosome binding  positive regulation of translational elongation  positive regulation of translational termination  mRNA transport  
Ontology : EGO-EBItranslation elongation factor activity  nuclear pore  endoplasmic reticulum membrane  translational elongation  protein transport  ribosome binding  positive regulation of translational elongation  positive regulation of translational termination  mRNA transport  
NDEx NetworkEIF5AL1
Atlas of Cancer Signalling NetworkEIF5AL1
Wikipedia pathwaysEIF5AL1
Orthology - Evolution
OrthoDB143244
GeneTree (enSembl)ENSG00000253626
Phylogenetic Trees/Animal Genes : TreeFamEIF5AL1
Homologs : HomoloGeneEIF5AL1
Homology/Alignments : Family Browser (UCSC)EIF5AL1
Gene fusions - Rearrangements
Fusion : QuiverEIF5AL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIF5AL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIF5AL1
dbVarEIF5AL1
ClinVarEIF5AL1
MonarchEIF5AL1
1000_GenomesEIF5AL1 
Exome Variant ServerEIF5AL1
GNOMAD BrowserENSG00000253626
Varsome BrowserEIF5AL1
ACMGEIF5AL1 variants
VarityQ6IS14
Genomic Variants (DGV)EIF5AL1 [DGVbeta]
DECIPHEREIF5AL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEIF5AL1 
Mutations
ICGC Data PortalEIF5AL1 
TCGA Data PortalEIF5AL1 
Broad Tumor PortalEIF5AL1
OASIS PortalEIF5AL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEIF5AL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DEIF5AL1
Mutations and Diseases : HGMDEIF5AL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaEIF5AL1
DgiDB (Drug Gene Interaction Database)EIF5AL1
DoCM (Curated mutations)EIF5AL1
CIViC (Clinical Interpretations of Variants in Cancer)EIF5AL1
Cancer3DEIF5AL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETEIF5AL1
MedgenEIF5AL1
Genetic Testing Registry EIF5AL1
NextProtQ6IS14 [Medical]
GENETestsEIF5AL1
Target ValidationEIF5AL1
Huge Navigator EIF5AL1 [HugePedia]
ClinGenEIF5AL1
Clinical trials, drugs, therapy
MyCancerGenomeEIF5AL1
Protein Interactions : CTDEIF5AL1
PharosQ6IS14
Clinical trialEIF5AL1
Miscellaneous
canSAR (ICR)EIF5AL1
HarmonizomeEIF5AL1
DataMed IndexEIF5AL1
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXEIF5AL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:07:57 CEST 2021

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