Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EIPR1 (EARP complex and GARP complex interacting protein 1)

Identity

Other aliasEIPR-1
TSSC1
HGNC (Hugo) EIPR1
LocusID (NCBI) 7260
Atlas_Id 56996
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3188924 and ends at 3377932 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)EIPR1   12383
Cards
Entrez_Gene (NCBI)EIPR1  7260  EARP complex and GARP complex interacting protein 1
AliasesEIPR-1; TSSC1
GeneCards (Weizmann)EIPR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:3188924-3377932 [Contig_View]  EIPR1 [Vega]
TCGA cBioPortalEIPR1
AceView (NCBI)EIPR1
Genatlas (Paris)EIPR1
WikiGenes7260
SOURCE (Princeton)EIPR1
Genetics Home Reference (NIH)EIPR1
Genomic and cartography
GoldenPath hg38 (UCSC)EIPR1  -     chr2:3188924-3377932 -  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EIPR1  -     2p25.3   [Description]    (hg19-Feb_2009)
EnsemblEIPR1 - 2p25.3 [CytoView hg19]  EIPR1 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBIEIPR1 [Mapview hg19]  EIPR1 [Mapview hg38]
OMIM608998   
Gene and transcription
Genbank (Entrez)AF019952 AK026522 AK126288 AK222652 BC002485
RefSeq transcript (Entrez)NM_001330530 NM_001330531 NM_003310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EIPR1
Cluster EST : UnigeneHs.502770 [ NCBI ]
CGAP (NCI)Hs.502770
Gene ExpressionEIPR1 [ NCBI-GEO ]   EIPR1 [ EBI - ARRAY_EXPRESS ]   EIPR1 [ SEEK ]   EIPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)EIPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7260
GTEX Portal (Tissue expression)EIPR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53HC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53HC9
Splice isoforms : SwissVarQ53HC9
PhosPhoSitePlusQ53HC9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)EIPR1
DMDM Disease mutations7260
Blocks (Seattle)EIPR1
SuperfamilyQ53HC9
Peptide AtlasQ53HC9
IPIIPI00019550   IPI00893829   IPI00893954   IPI00893550   IPI00893676   IPI00894326   IPI00894442   IPI00894302   
Protein Interaction databases
DIP (DOE-UCLA)Q53HC9
IntAct (EBI)Q53HC9
BioGRIDEIPR1
STRING (EMBL)EIPR1
ZODIACEIPR1
Ontologies - Pathways
QuickGOQ53HC9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEIPR1
Atlas of Cancer Signalling NetworkEIPR1
Wikipedia pathwaysEIPR1
Orthology - Evolution
OrthoDB7260
Phylogenetic Trees/Animal Genes : TreeFamEIPR1
HOVERGENQ53HC9
HOGENOMQ53HC9
Homologs : HomoloGeneEIPR1
Homology/Alignments : Family Browser (UCSC)EIPR1
Gene fusions - Rearrangements
Tumor Fusion PortalEIPR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIPR1
dbVarEIPR1
ClinVarEIPR1
1000_GenomesEIPR1 
Exome Variant ServerEIPR1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP7260
Genomic Variants (DGV)EIPR1 [DGVbeta]
DECIPHEREIPR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEIPR1 
Mutations
ICGC Data PortalEIPR1 
TCGA Data PortalEIPR1 
Broad Tumor PortalEIPR1
OASIS PortalEIPR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEIPR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EIPR1
DgiDB (Drug Gene Interaction Database)EIPR1
DoCM (Curated mutations)EIPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EIPR1 (select a term)
intoGenEIPR1
Cancer3DEIPR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608998   
Orphanet
DisGeNETEIPR1
MedgenEIPR1
Genetic Testing Registry EIPR1
NextProtQ53HC9 [Medical]
TSGene7260
GENETestsEIPR1
Target ValidationEIPR1
Huge Navigator EIPR1 [HugePedia]
snp3D : Map Gene to Disease7260
BioCentury BCIQEIPR1
ClinGenEIPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7260
Chemical/Pharm GKB GenePA37051
Clinical trialEIPR1
Miscellaneous
canSAR (ICR)EIPR1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEIPR1
EVEXEIPR1
GoPubMedEIPR1
iHOPEIPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:35:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.