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EIPR1 (EARP complex and GARP complex interacting protein 1)

Identity

Alias (NCBI)EIPR-1
TSSC1
HGNC (Hugo) EIPR1
HGNC Alias symbEIPR-1
HGNC Previous nameTSSC1
HGNC Previous nametumor suppressing subtransferable candidate 1
LocusID (NCBI) 7260
Atlas_Id 56996
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3188925 and ends at 3377818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)EIPR1   12383
Cards
Entrez_Gene (NCBI)EIPR1    EARP complex and GARP complex interacting protein 1
AliasesEIPR-1; TSSC1
GeneCards (Weizmann)EIPR1
Ensembl hg19 (Hinxton)ENSG00000032389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000032389 [Gene_View]  ENSG00000032389 [Sequence]  chr2:3188925-3377818 [Contig_View]  EIPR1 [Vega]
ICGC DataPortalENSG00000032389
TCGA cBioPortalEIPR1
AceView (NCBI)EIPR1
Genatlas (Paris)EIPR1
SOURCE (Princeton)EIPR1
Genetics Home Reference (NIH)EIPR1
Genomic and cartography
GoldenPath hg38 (UCSC)EIPR1  -     chr2:3188925-3377818 -  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EIPR1  -     2p25.3   [Description]    (hg19-Feb_2009)
GoldenPathEIPR1 - 2p25.3 [CytoView hg19]  EIPR1 - 2p25.3 [CytoView hg38]
ImmunoBaseENSG00000032389
Genome Data Viewer NCBIEIPR1 [Mapview hg19]  
OMIM608998   
Gene and transcription
Genbank (Entrez)AF019952 AK026522 AK126288 AK222652 BC002485
RefSeq transcript (Entrez)NM_001330530 NM_001330531 NM_003310
Consensus coding sequences : CCDS (NCBI)EIPR1
Gene ExpressionEIPR1 [ NCBI-GEO ]   EIPR1 [ EBI - ARRAY_EXPRESS ]   EIPR1 [ SEEK ]   EIPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)EIPR1 [ Firebrowse - Broad ]
GenevisibleExpression of EIPR1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7260
GTEX Portal (Tissue expression)EIPR1
Human Protein AtlasENSG00000032389-EIPR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53HC9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53HC9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53HC9
PhosPhoSitePlusQ53HC9
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)EIPR1    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)EIPR1
SuperfamilyQ53HC9
AlphaFold pdb e-kbQ53HC9   
Human Protein Atlas [tissue]ENSG00000032389-EIPR1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q53HC9
IntAct (EBI)Q53HC9
BioGRIDEIPR1
STRING (EMBL)EIPR1
ZODIACEIPR1
Ontologies - Pathways
QuickGOQ53HC9
Ontology : AmiGOprotein binding  trans-Golgi network  protein ubiquitination  endocytic recycling  regulation of insulin secretion  positive regulation of retrograde transport, endosome to Golgi  positive regulation of endocytic recycling  
Ontology : EGO-EBIprotein binding  trans-Golgi network  protein ubiquitination  endocytic recycling  regulation of insulin secretion  positive regulation of retrograde transport, endosome to Golgi  positive regulation of endocytic recycling  
NDEx NetworkEIPR1
Atlas of Cancer Signalling NetworkEIPR1
Wikipedia pathwaysEIPR1
Orthology - Evolution
OrthoDB7260
GeneTree (enSembl)ENSG00000032389
Phylogenetic Trees/Animal Genes : TreeFamEIPR1
Homologs : HomoloGeneEIPR1
Homology/Alignments : Family Browser (UCSC)EIPR1
Gene fusions - Rearrangements
Fusion : QuiverEIPR1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEIPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EIPR1
dbVarEIPR1
ClinVarEIPR1
MonarchEIPR1
1000_GenomesEIPR1 
Exome Variant ServerEIPR1
GNOMAD BrowserENSG00000032389
Varsome BrowserEIPR1
ACMGEIPR1 variants
VarityQ53HC9
Genomic Variants (DGV)EIPR1 [DGVbeta]
DECIPHEREIPR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEIPR1 
Mutations
ICGC Data PortalEIPR1 
TCGA Data PortalEIPR1 
Broad Tumor PortalEIPR1
OASIS PortalEIPR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEIPR1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DEIPR1
Mutations and Diseases : HGMDEIPR1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaEIPR1
DgiDB (Drug Gene Interaction Database)EIPR1
DoCM (Curated mutations)EIPR1
CIViC (Clinical Interpretations of Variants in Cancer)EIPR1
Cancer3DEIPR1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608998   
Orphanet
DisGeNETEIPR1
MedgenEIPR1
Genetic Testing Registry EIPR1
NextProtQ53HC9 [Medical]
GENETestsEIPR1
Target ValidationEIPR1
Huge Navigator EIPR1 [HugePedia]
ClinGenEIPR1
Clinical trials, drugs, therapy
MyCancerGenomeEIPR1
Protein Interactions : CTDEIPR1
Pharm GKB GenePA37051
PharosQ53HC9
Clinical trialEIPR1
Miscellaneous
canSAR (ICR)EIPR1
HarmonizomeEIPR1
DataMed IndexEIPR1
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXEIPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:07:58 CEST 2021

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