Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ELAVL3 (ELAV like RNA binding protein 3)

Identity

Alias (NCBI)HUC
HUCL
PLE21
HGNC (Hugo) ELAVL3
HGNC Alias symbHUC
PLE21
DKFZp547J036
HUCL
MGC20653
HGNC Alias nameHu antigen C
 paraneoplastic limbic encephalitis antigen 21
 paraneoplastic cerebellar degeneration-associated antigen
 ELAV-like protein 3
HGNC Previous nameELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
 ELAV like neuron-specific RNA binding protein 3
LocusID (NCBI) 1995
Atlas_Id 56093
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11451326 and ends at 11481046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FGFR3 (4p16.3) / ELAVL3 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ELAVL3   3314
Cards
Entrez_Gene (NCBI)ELAVL3    ELAV like RNA binding protein 3
AliasesHUC; HUCL; PLE21
GeneCards (Weizmann)ELAVL3
Ensembl hg19 (Hinxton)ENSG00000196361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196361 [Gene_View]  ENSG00000196361 [Sequence]  chr19:11451326-11481046 [Contig_View]  ELAVL3 [Vega]
ICGC DataPortalENSG00000196361
TCGA cBioPortalELAVL3
AceView (NCBI)ELAVL3
Genatlas (Paris)ELAVL3
SOURCE (Princeton)ELAVL3
Genetics Home Reference (NIH)ELAVL3
Genomic and cartography
GoldenPath hg38 (UCSC)ELAVL3  -     chr19:11451326-11481046 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELAVL3  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathELAVL3 - 19p13.2 [CytoView hg19]  ELAVL3 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000196361
genome Data Viewer NCBIELAVL3 [Mapview hg19]  
OMIM603458   
Gene and transcription
Genbank (Entrez)AI199100 AY034002 AY036909 BC011875 BC014144
RefSeq transcript (Entrez)NM_001420 NM_032281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELAVL3
Alternative Splicing GalleryENSG00000196361
Gene ExpressionELAVL3 [ NCBI-GEO ]   ELAVL3 [ EBI - ARRAY_EXPRESS ]   ELAVL3 [ SEEK ]   ELAVL3 [ MEM ]
Gene Expression Viewer (FireBrowse)ELAVL3 [ Firebrowse - Broad ]
GenevisibleExpression of ELAVL3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1995
GTEX Portal (Tissue expression)ELAVL3
Human Protein AtlasENSG00000196361-ELAVL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14576   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14576  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14576
Splice isoforms : SwissVarQ14576
PhosPhoSitePlusQ14576
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)ELAD_HU_SF    ELAV/Hu_RRM1    HuC_RRM3    Hud_Sxl_RNA    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)ELAVL3
Blocks (Seattle)ELAVL3
SuperfamilyQ14576
Human Protein Atlas [tissue]ENSG00000196361-ELAVL3 [tissue]
Peptide AtlasQ14576
HPRD16024
IPIIPI00031552   IPI00140449   IPI00031074   
Protein Interaction databases
DIP (DOE-UCLA)Q14576
IntAct (EBI)Q14576
BioGRIDELAVL3
STRING (EMBL)ELAVL3
ZODIACELAVL3
Ontologies - Pathways
QuickGOQ14576
Ontology : AmiGOnervous system development  cell differentiation  mRNA 3'-UTR AU-rich region binding  ribonucleoprotein complex  
Ontology : EGO-EBInervous system development  cell differentiation  mRNA 3'-UTR AU-rich region binding  ribonucleoprotein complex  
NDEx NetworkELAVL3
Atlas of Cancer Signalling NetworkELAVL3
Wikipedia pathwaysELAVL3
Orthology - Evolution
OrthoDB1995
GeneTree (enSembl)ENSG00000196361
Phylogenetic Trees/Animal Genes : TreeFamELAVL3
HOGENOMQ14576
Homologs : HomoloGeneELAVL3
Homology/Alignments : Family Browser (UCSC)ELAVL3
Gene fusions - Rearrangements
Fusion : QuiverELAVL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELAVL3 [hg38]
dbVarELAVL3
ClinVarELAVL3
MonarchELAVL3
1000_GenomesELAVL3 
Exome Variant ServerELAVL3
GNOMAD BrowserENSG00000196361
Varsome BrowserELAVL3
Genomic Variants (DGV)ELAVL3 [DGVbeta]
DECIPHERELAVL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELAVL3 
Mutations
ICGC Data PortalELAVL3 
TCGA Data PortalELAVL3 
Broad Tumor PortalELAVL3
OASIS PortalELAVL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELAVL3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DELAVL3
Mutations and Diseases : HGMDELAVL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELAVL3
DgiDB (Drug Gene Interaction Database)ELAVL3
DoCM (Curated mutations)ELAVL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELAVL3 (select a term)
intoGenELAVL3
Cancer3DELAVL3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603458   
Orphanet
DisGeNETELAVL3
MedgenELAVL3
Genetic Testing Registry ELAVL3
NextProtQ14576 [Medical]
GENETestsELAVL3
Target ValidationELAVL3
Huge Navigator ELAVL3 [HugePedia]
ClinGenELAVL3
Clinical trials, drugs, therapy
MyCancerGenomeELAVL3
Protein Interactions : CTD
Pharm GKB GenePA27742
PharosQ14576
Clinical trialELAVL3
Miscellaneous
canSAR (ICR)ELAVL3 (select the gene name)
HarmonizomeELAVL3
DataMed IndexELAVL3
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXELAVL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:19:48 CET 2021

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