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ELAVL3 (ELAV like RNA binding protein 3)

Identity

Alias_namesELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)
ELAV like neuron-specific RNA binding protein 3
Alias_symbol (synonym)HUC
PLE21
DKFZp547J036
HUCL
MGC20653
Other alias
HGNC (Hugo) ELAVL3
LocusID (NCBI) 1995
Atlas_Id 56093
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11451328 and ends at 11480988 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FGFR3 (4p16.3) / ELAVL3 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELAVL3   3314
Cards
Entrez_Gene (NCBI)ELAVL3  1995  ELAV like RNA binding protein 3
AliasesHUC; HUCL; PLE21
GeneCards (Weizmann)ELAVL3
Ensembl hg19 (Hinxton)ENSG00000196361 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196361 [Gene_View]  chr19:11451328-11480988 [Contig_View]  ELAVL3 [Vega]
ICGC DataPortalENSG00000196361
TCGA cBioPortalELAVL3
AceView (NCBI)ELAVL3
Genatlas (Paris)ELAVL3
WikiGenes1995
SOURCE (Princeton)ELAVL3
Genetics Home Reference (NIH)ELAVL3
Genomic and cartography
GoldenPath hg38 (UCSC)ELAVL3  -     chr19:11451328-11480988 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELAVL3  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblELAVL3 - 19p13.2 [CytoView hg19]  ELAVL3 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIELAVL3 [Mapview hg19]  ELAVL3 [Mapview hg38]
OMIM603458   
Gene and transcription
Genbank (Entrez)AI199100 AY034002 AY036909 BC011875 BC014144
RefSeq transcript (Entrez)NM_001420 NM_032281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELAVL3
Cluster EST : UnigeneHs.1701 [ NCBI ]
CGAP (NCI)Hs.1701
Alternative Splicing GalleryENSG00000196361
Gene ExpressionELAVL3 [ NCBI-GEO ]   ELAVL3 [ EBI - ARRAY_EXPRESS ]   ELAVL3 [ SEEK ]   ELAVL3 [ MEM ]
Gene Expression Viewer (FireBrowse)ELAVL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1995
GTEX Portal (Tissue expression)ELAVL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14576   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14576  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14576
Splice isoforms : SwissVarQ14576
PhosPhoSitePlusQ14576
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)ELAD_HUD_SF    Hud_Sxl_RNA    Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  RRM_1 (SM00361)  
Conserved Domain (NCBI)ELAVL3
DMDM Disease mutations1995
Blocks (Seattle)ELAVL3
SuperfamilyQ14576
Human Protein AtlasENSG00000196361
Peptide AtlasQ14576
HPRD16024
IPIIPI00031552   IPI00140449   IPI00031074   
Protein Interaction databases
DIP (DOE-UCLA)Q14576
IntAct (EBI)Q14576
FunCoupENSG00000196361
BioGRIDELAVL3
STRING (EMBL)ELAVL3
ZODIACELAVL3
Ontologies - Pathways
QuickGOQ14576
Ontology : AmiGOnervous system development  AU-rich element binding  cell differentiation  
Ontology : EGO-EBInervous system development  AU-rich element binding  cell differentiation  
NDEx NetworkELAVL3
Atlas of Cancer Signalling NetworkELAVL3
Wikipedia pathwaysELAVL3
Orthology - Evolution
OrthoDB1995
GeneTree (enSembl)ENSG00000196361
Phylogenetic Trees/Animal Genes : TreeFamELAVL3
HOVERGENQ14576
HOGENOMQ14576
Homologs : HomoloGeneELAVL3
Homology/Alignments : Family Browser (UCSC)ELAVL3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELAVL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELAVL3
dbVarELAVL3
ClinVarELAVL3
1000_GenomesELAVL3 
Exome Variant ServerELAVL3
ExAC (Exome Aggregation Consortium)ELAVL3 (select the gene name)
Genetic variants : HAPMAP1995
Genomic Variants (DGV)ELAVL3 [DGVbeta]
DECIPHERELAVL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELAVL3 
Mutations
ICGC Data PortalELAVL3 
TCGA Data PortalELAVL3 
Broad Tumor PortalELAVL3
OASIS PortalELAVL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELAVL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELAVL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELAVL3
DgiDB (Drug Gene Interaction Database)ELAVL3
DoCM (Curated mutations)ELAVL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELAVL3 (select a term)
intoGenELAVL3
Cancer3DELAVL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603458   
Orphanet
MedgenELAVL3
Genetic Testing Registry ELAVL3
NextProtQ14576 [Medical]
TSGene1995
GENETestsELAVL3
Target ValidationELAVL3
Huge Navigator ELAVL3 [HugePedia]
snp3D : Map Gene to Disease1995
BioCentury BCIQELAVL3
ClinGenELAVL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1995
Chemical/Pharm GKB GenePA27742
Clinical trialELAVL3
Miscellaneous
canSAR (ICR)ELAVL3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELAVL3
EVEXELAVL3
GoPubMedELAVL3
iHOPELAVL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:25 CEST 2017

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