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ELF1 (E74 like ETS transcription factor 1)

Identity

HGNC (Hugo) ELF1
LocusID (NCBI) 1997
Atlas_Id 45732
Location 13q14.11
Location_base_pair Starts at 41506055 and ends at 41556418 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DUSP16 (12p13.2) / ELF1 (13q14.11)ELF1 (13q14.11) / C4orf45 (4q32.1)ELF1 (13q14.11) / CCT2 (12q15)
ELF1 (13q14.11) / TSIX (Xq13.2)FOXO1 (13q14.11) / ELF1 (13q14.11)SLC25A37 (8p21.2) / ELF1 (13q14.11)
FOXO1 13q14.11 / ELF1 13q14.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELF1   3316
Cards
Entrez_Gene (NCBI)ELF1  1997  E74 like ETS transcription factor 1
GeneCards (Weizmann)ELF1
Ensembl hg19 (Hinxton)ENSG00000120690 [Gene_View]  chr13:41506055-41556418 [Contig_View]  ELF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120690 [Gene_View]  chr13:41506055-41556418 [Contig_View]  ELF1 [Vega]
ICGC DataPortalENSG00000120690
TCGA cBioPortalELF1
AceView (NCBI)ELF1
Genatlas (Paris)ELF1
WikiGenes1997
SOURCE (Princeton)ELF1
Genomic and cartography
GoldenPath hg19 (UCSC)ELF1  -     chr13:41506055-41556418 -  13q14.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ELF1  -     13q14.11   [Description]    (hg38-Dec_2013)
EnsemblELF1 - 13q14.11 [CytoView hg19]  ELF1 - 13q14.11 [CytoView hg38]
Mapping of homologs : NCBIELF1 [Mapview hg19]  ELF1 [Mapview hg38]
OMIM189973   
Gene and transcription
Genbank (Entrez)AK095466 AK304289 BC010575 BC030507 BQ722965
RefSeq transcript (Entrez)NM_001145353 NM_172373
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)ELF1
Cluster EST : UnigeneHs.135646 [ NCBI ]
CGAP (NCI)Hs.135646
Alternative Splicing : Fast-db (Paris)GSHG0008446
Alternative Splicing GalleryENSG00000120690
Gene ExpressionELF1 [ NCBI-GEO ]   ELF1 [ EBI - ARRAY_EXPRESS ]   ELF1 [ SEEK ]   ELF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ELF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)1997
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32519 (Uniprot)
NextProtP32519  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32519
Splice isoforms : SwissVarP32519 (Swissvar)
PhosPhoSitePlusP32519
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    TF_Elf_N    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Elf-1_N (PF12310)    Ets (PF00178)   
Domain families : Pfam (NCBI)pfam12310    pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM Disease mutations1997
Blocks (Seattle)ELF1
SuperfamilyP32519
Human Protein AtlasENSG00000120690
Peptide AtlasP32519
HPRD01808
IPIIPI00167002   IPI01011653   IPI00384476   
Protein Interaction databases
DIP (DOE-UCLA)P32519
IntAct (EBI)P32519
FunCoupENSG00000120690
BioGRIDELF1
STRING (EMBL)ELF1
ZODIACELF1
Ontologies - Pathways
QuickGOP32519
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  regulation of cytokine production  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell differentiation  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  negative regulation of T cell receptor signaling pathway  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  regulation of cytokine production  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell differentiation  positive regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  negative regulation of T cell receptor signaling pathway  
NDEx Network
Atlas of Cancer Signalling NetworkELF1
Wikipedia pathwaysELF1
Orthology - Evolution
OrthoDB1997
GeneTree (enSembl)ENSG00000120690
Phylogenetic Trees/Animal Genes : TreeFamELF1
Homologs : HomoloGeneELF1
Homology/Alignments : Family Browser (UCSC)ELF1
Gene fusions - Rearrangements
Fusion: TCGAFOXO1 13q14.11 ELF1 13q14.11 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerELF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELF1
dbVarELF1
ClinVarELF1
1000_GenomesELF1 
Exome Variant ServerELF1
ExAC (Exome Aggregation Consortium)ELF1 (select the gene name)
SNP (GeneSNP Utah)ELF1
SNP : HGBaseELF1
Genetic variants : HAPMAPELF1
Genomic Variants (DGV)ELF1 [DGVbeta]
Mutations
ICGC Data PortalELF1 
TCGA Data PortalELF1 
Broad Tumor PortalELF1
OASIS PortalELF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELF1
DgiDB (Drug Gene Interaction Database)ELF1
DoCM (Curated mutations)ELF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELF1 (select a term)
intoGenELF1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:41506055-41556418
CONAN: Copy Number AnalysisELF1 
Mutations and Diseases : HGMDELF1
OMIM189973   
MedgenELF1
Genetic Testing Registry ELF1
NextProtP32519 [Medical]
TSGene1997
GENETestsELF1
Huge Navigator ELF1 [HugePedia]  ELF1 [HugeCancerGEM]
snp3D : Map Gene to Disease1997
BioCentury BCIQELF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1997
Chemical/Pharm GKB GenePA27744
Clinical trialELF1
Miscellaneous
canSAR (ICR)ELF1 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELF1
GoPubMedELF1
iHOPELF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 17:43:39 CEST 2016

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