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ELF1 (E74-like factor 1 (ets domain transcription factor))

Identity

Other names-
HGNC (Hugo) ELF1
LocusID (NCBI) 1997
Location 13q14.11
Location_base_pair Starts at 41506055 and ends at 41556418 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ELF1   3316
Cards
Entrez_Gene (NCBI)ELF1  1997  E74-like factor 1 (ets domain transcription factor)
GeneCards (Weizmann)ELF1
Ensembl (Hinxton)ENSG00000120690 [Gene_View]  chr13:41506055-41556418 [Contig_View]  ELF1 [Vega]
AceView (NCBI)ELF1
Genatlas (Paris)ELF1
WikiGenes1997
SOURCE (Princeton)NM_001145353 NM_172373
Genomic and cartography
GoldenPath (UCSC)ELF1  -  13q14.11   chr13:41506055-41556418 -  13q14.11   [Description]    (hg19-Feb_2009)
EnsemblELF1 - 13q14.11 [CytoView]
Mapping of homologs : NCBIELF1 [Mapview]
OMIM189973   
Gene and transcription
Genbank (Entrez)AK095466 AK304289 BC010575 BC030507 BQ722965
RefSeq transcript (Entrez)NM_001145353 NM_172373
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838073 NW_004929388
Consensus coding sequences : CCDS (NCBI)ELF1
Cluster EST : UnigeneHs.135646 [ NCBI ]
CGAP (NCI)Hs.135646
Alternative Splicing : Fast-db (Paris)GSHG0008446
Alternative Splicing GalleryENSG00000120690
Gene ExpressionELF1 [ NCBI-GEO ]     ELF1 [ SEEK ]   ELF1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32519 (Uniprot)
NextProtP32519  [Medical]
With graphics : InterProP32519
Splice isoforms : SwissVarP32519 (Swissvar)
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    TF_Elf_N    WHTH_DNA-bd_dom   
Related proteins : CluSTrP32519
Domain families : Pfam (Sanger)Elf-1_N (PF12310)    Ets (PF00178)   
Domain families : Pfam (NCBI)pfam12310    pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM Disease mutations1997
Blocks (Seattle)P32519
Human Protein AtlasENSG00000120690
Peptide AtlasP32519
HPRD01808
IPIIPI00167002   IPI01011653   IPI00384476   
Protein Interaction databases
DIP (DOE-UCLA)P32519
IntAct (EBI)P32519
FunCoupENSG00000120690
BioGRIDELF1
InParanoidP32519
Interologous Interaction database P32519
IntegromeDBELF1
STRING (EMBL)ELF1
Ontologies - Pathways
Ontology : AmiGOregulation of cytokine production  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  negative regulation of T cell receptor signaling pathway  
Ontology : EGO-EBIregulation of cytokine production  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  negative regulation of T cell receptor signaling pathway  
REACTOMEELF1
Protein Interaction DatabaseELF1
Wikipedia pathwaysELF1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ELF1
SNP (GeneSNP Utah)ELF1
SNP : HGBaseELF1
Genetic variants : HAPMAPELF1
1000_GenomesELF1 
ICGC programENSG00000120690 
Somatic Mutations in Cancer : COSMICELF1 
CONAN: Copy Number AnalysisELF1 
Mutations and Diseases : HGMDELF1
OMIM189973   
GENETestsELF1
Disease Genetic AssociationELF1
Huge Navigator ELF1 [HugePedia]  ELF1 [HugeCancerGEM]
Genomic VariantsELF1  ELF1 [DGVbeta]
Exome VariantELF1
dbVarELF1
ClinVarELF1
snp3D : Map Gene to Disease1997
General knowledge
Homologs : HomoloGeneELF1
Homology/Alignments : Family Browser (UCSC)ELF1
Phylogenetic Trees/Animal Genes : TreeFamELF1
Chemical/Protein Interactions : CTD1997
Chemical/Pharm GKB GenePA27744
Clinical trialELF1
Cancer Resource (Charite)ENSG00000120690
Other databases
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
CoreMineELF1
iHOPELF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:13:42 CEST 2014

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