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ELF2 (E74-like factor 2 (ets domain transcription factor))

Identity

Other namesEU32
NERF
NERF-1A
NERF-1B
NERF-1a,b
NERF-2
HGNC (Hugo) ELF2
LocusID (NCBI) 1998
Location 4q31.1
Location_base_pair Starts at 139978871 and ends at 140005568 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ELF2   3317
Cards
Entrez_Gene (NCBI)ELF2  1998  E74-like factor 2 (ets domain transcription factor)
GeneCards (Weizmann)ELF2
Ensembl (Hinxton)ENSG00000109381 [Gene_View]  chr4:139978871-140005568 [Contig_View]  ELF2 [Vega]
AceView (NCBI)ELF2
Genatlas (Paris)ELF2
WikiGenes1998
SOURCE (Princeton)NM_001276457 NM_001276458 NM_001276459 NM_006874 NM_201999
Genomic and cartography
GoldenPath (UCSC)ELF2  -  4q31.1   chr4:139978871-140005568 -  4q31.1   [Description]    (hg19-Feb_2009)
EnsemblELF2 - 4q31.1 [CytoView]
Mapping of homologs : NCBIELF2 [Mapview]
Gene and transcription
Genbank (Entrez)AF256222 AF256223 AK301307 AK303782 AK316455
RefSeq transcript (Entrez)NM_001276457 NM_001276458 NM_001276459 NM_006874 NM_201999
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_016354 NW_001838921 NW_004929320
Consensus coding sequences : CCDS (NCBI)ELF2
Cluster EST : UnigeneHs.634040 [ NCBI ]
CGAP (NCI)Hs.634040
Alternative Splicing : Fast-db (Paris)GSHG0023529
Alternative Splicing GalleryENSG00000109381
Gene ExpressionELF2 [ NCBI-GEO ]     ELF2 [ SEEK ]   ELF2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15723 (Uniprot)
NextProtQ15723  [Medical]
With graphics : InterProQ15723
Splice isoforms : SwissVarQ15723 (Swissvar)
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (EBI)Ets_dom    TF_Elf_N    WHTH_DNA-bd_dom   
Related proteins : CluSTrQ15723
Domain families : Pfam (Sanger)Elf-1_N (PF12310)    Ets (PF00178)   
Domain families : Pfam (NCBI)pfam12310    pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM Disease mutations1998
Blocks (Seattle)Q15723
Human Protein AtlasENSG00000109381
Peptide AtlasQ15723
HPRD16856
IPIIPI00009995   IPI00607896   IPI00396265   IPI00607557   IPI00887863   IPI00439925   IPI00966545   IPI00967762   
Protein Interaction databases
DIP (DOE-UCLA)Q15723
IntAct (EBI)Q15723
FunCoupENSG00000109381
BioGRIDELF2
InParanoidQ15723
Interologous Interaction database Q15723
IntegromeDBELF2
STRING (EMBL)ELF2
Ontologies - Pathways
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  sequence-specific DNA binding  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  
REACTOMEELF2
Protein Interaction DatabaseELF2
Wikipedia pathwaysELF2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ELF2
SNP (GeneSNP Utah)ELF2
SNP : HGBaseELF2
Genetic variants : HAPMAPELF2
1000_GenomesELF2 
ICGC programENSG00000109381 
Somatic Mutations in Cancer : COSMICELF2 
CONAN: Copy Number AnalysisELF2 
Mutations and Diseases : HGMDELF2
OMIM
GENETestsELF2
Disease Genetic AssociationELF2
Huge Navigator ELF2 [HugePedia]  ELF2 [HugeCancerGEM]
Genomic VariantsELF2  ELF2 [DGVbeta]
Exome VariantELF2
dbVarELF2
ClinVarELF2
snp3D : Map Gene to Disease1998
General knowledge
Homologs : HomoloGeneELF2
Homology/Alignments : Family Browser (UCSC)ELF2
Phylogenetic Trees/Animal Genes : TreeFamELF2
Chemical/Protein Interactions : CTD1998
Chemical/Pharm GKB GenePA27745
Clinical trialELF2
Cancer Resource (Charite)ENSG00000109381
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineELF2
iHOPELF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:13:44 CEST 2014

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