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ELF3 (E74-like factor 3 (ets domain transcription factor, epithelial-specific ))

Identity

Other namesEPR-1
ERT
ESE-1
ESX
HGNC (Hugo) ELF3
LocusID (NCBI) 1999
Location 1q32.1
Location_base_pair Starts at 201979690 and ends at 201986315 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ELF3   3318
Cards
Entrez_Gene (NCBI)ELF3  1999  E74-like factor 3 (ets domain transcription factor, epithelial-specific )
GeneCards (Weizmann)ELF3
Ensembl (Hinxton)ENSG00000163435 [Gene_View]  chr1:201979690-201986315 [Contig_View]  ELF3 [Vega]
AceView (NCBI)ELF3
Genatlas (Paris)ELF3
WikiGenes1999
SOURCE (Princeton)NM_001114309 NM_004433
Genomic and cartography
GoldenPath (UCSC)ELF3  -  1q32.1   chr1:201979690-201986315 +  1q32.1   [Description]    (hg19-Feb_2009)
EnsemblELF3 - 1q32.1 [CytoView]
Mapping of homologs : NCBIELF3 [Mapview]
OMIM602191   
Gene and transcription
Genbank (Entrez)AF016295 AF017307 AF517841 AK225446 AK309265
RefSeq transcript (Entrez)NM_001114309 NM_004433
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004487 NW_001838533 NW_004929293
Consensus coding sequences : CCDS (NCBI)ELF3
Cluster EST : UnigeneHs.603657 [ NCBI ]
CGAP (NCI)Hs.603657
Alternative Splicing : Fast-db (Paris)GSHG0001333
Alternative Splicing GalleryENSG00000163435
Gene ExpressionELF3 [ NCBI-GEO ]     ELF3 [ SEEK ]   ELF3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78545 (Uniprot)
NextProtP78545  [Medical]
With graphics : InterProP78545
Splice isoforms : SwissVarP78545 (Swissvar)
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)    PNT (PS51433)   
Domains : Interpro (EBI)AT_hook_DNA-bd_motif    Ets_dom    Pointed_dom    SAM/pointed    WHTH_DNA-bd_dom   
Related proteins : CluSTrP78545
Domain families : Pfam (Sanger)Ets (PF00178)    SAM_PNT (PF02198)   
Domain families : Pfam (NCBI)pfam00178    pfam02198   
Domain families : Smart (EMBL)AT_hook (SM00384)  ETS (SM00413)  SAM_PNT (SM00251)  
DMDM Disease mutations1999
Blocks (Seattle)P78545
PDB (SRS)2E8P   
PDB (PDBSum)2E8P   
PDB (IMB)2E8P   
PDB (RSDB)2E8P   
Human Protein AtlasENSG00000163435
Peptide AtlasP78545
HPRD03722
IPIIPI00004581   IPI00844532   IPI00984618   IPI00643579   
Protein Interaction databases
DIP (DOE-UCLA)P78545
IntAct (EBI)P78545
FunCoupENSG00000163435
BioGRIDELF3
InParanoidP78545
Interologous Interaction database P78545
IntegromeDBELF3
STRING (EMBL)ELF3
Ontologies - Pathways
Ontology : AmiGOblastocyst development  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  Golgi apparatus  transcription from RNA polymerase II promoter  inflammatory response  multicellular organismal development  epidermis development  extracellular matrix organization  epithelial cell differentiation  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  mammary gland involution  
Ontology : EGO-EBIblastocyst development  sequence-specific DNA binding transcription factor activity  transcription coactivator activity  protein binding  nucleus  nucleus  nucleolus  cytoplasm  Golgi apparatus  transcription from RNA polymerase II promoter  inflammatory response  multicellular organismal development  epidermis development  extracellular matrix organization  epithelial cell differentiation  sequence-specific DNA binding  negative regulation of transcription, DNA-dependent  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  mammary gland involution  
REACTOMEELF3
Protein Interaction DatabaseELF3
Wikipedia pathwaysELF3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ELF3
SNP (GeneSNP Utah)ELF3
SNP : HGBaseELF3
Genetic variants : HAPMAPELF3
1000_GenomesELF3 
ICGC programENSG00000163435 
Somatic Mutations in Cancer : COSMICELF3 
CONAN: Copy Number AnalysisELF3 
Mutations and Diseases : HGMDELF3
OMIM602191   
GENETestsELF3
Disease Genetic AssociationELF3
Huge Navigator ELF3 [HugePedia]  ELF3 [HugeCancerGEM]
Genomic VariantsELF3  ELF3 [DGVbeta]
Exome VariantELF3
dbVarELF3
ClinVarELF3
snp3D : Map Gene to Disease1999
General knowledge
Homologs : HomoloGeneELF3
Homology/Alignments : Family Browser (UCSC)ELF3
Phylogenetic Trees/Animal Genes : TreeFamELF3
Chemical/Protein Interactions : CTD1999
Chemical/Pharm GKB GenePA27746
Clinical trialELF3
Cancer Resource (Charite)ENSG00000163435
Other databases
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
CoreMineELF3
iHOPELF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:13:46 CEST 2014

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