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ELF4 (E74-like factor 4 (ets domain transcription factor))

Identity

Other namesELFR
MEF
HGNC (Hugo) ELF4
LocusID (NCBI) 2000
Location Xq26.1
Location_base_pair Starts at 129198895 and ends at 129244688 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ELF4   3319
Entrez_Gene (NCBI)ELF4  2000  E74-like factor 4 (ets domain transcription factor)
Cards
GeneCards (Weizmann)ELF4
Ensembl (Hinxton)ENSG00000102034 [Gene_View]  chrX:129198895-129244688 [Contig_View]  ELF4 [Vega]
AceView (NCBI)ELF4
Genatlas (Paris)ELF4
SOURCE (Stanford)NM_001127197 NM_001421
Genomic and cartography
GoldenPath (UCSC)ELF4  -  Xq26.1   chrX:129198895-129244688 -  Xq26.1   [Description]    (hg19-Feb_2009)
EnsemblELF4 - Xq26.1 [CytoView]
Mapping of homologs : NCBIELF4 [Mapview]
OMIM300775   
Gene and transcription
Genbank (Entrez)AF000670 AK314972 BC017194 BC114355 BC114356
RefSeq transcript (SRS)NM_001127197 NM_001421
RefSeq transcript (Entrez)NM_001127197 NM_001421
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_016388 NT_011786 NW_001842398 NW_004078125
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_016388 NT_011786 NW_001842398 NW_004078125
Consensus coding sequences : CCDS (NCBI)ELF4
Cluster EST : UnigeneHs.271940 [ SRS ] Hs.271940 [ NCBI ]
CGAP (NCI)Hs.271940
Alternative Splicing : Fast-db (Paris)GSHG0032325
Alternative Splicing GalleryENSG00000102034
Gene ExpressionELF4 [ NCBI-GEO ]   ELF4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99607 (SRS) Q99607 (Uniprot)
NextProtQ99607
With graphics : InterProQ99607
Splice isoforms : SwissVarQ99607(Swissvar)
Domaine pattern : Prosite (SRS)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_1 (PS00345)    ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)   
Domains : Interpro (SRS)Ets    TF_Elf_N    WHTH_trsnscrt_rep_DNA-bd   
Domains : Interpro (EBI)Ets    TF_Elf_N    WHTH_trsnscrt_rep_DNA-bd   
Related proteins : CluSTrQ99607
Domain families : Pfam (SRS)Elf-1_N (PF12310)    Ets (PF00178)   
Domain families : Pfam (Sanger)Elf-1_N (PF12310)    Ets (PF00178)   
Domain families : Pfam (NCBI)pfam12310    pfam00178   
Domain families : Smart (EMBL)ETS (SM00413)  
DMDM2000
Blocks (Seattle)Q99607
Human Protein AtlasENSG00000102034
HPRD06499
IPIIPI00170744   IPI00029626   
Protein Interaction databases
DIP (DOE-UCLA)Q99607
IntAct (EBI)Q99607
FunCoupENSG00000102034
REACTOMEELF4
Protein Interaction Database2000
BioGRIDELF4
InParanoidQ99607
Interologous Interaction database Q99607
IntegromeDBELF4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ELF4
SNP (GeneSNP Utah)ELF4
SNP : HGBaseELF4
Genetic variants : HAPMAPELF4
Cancer Gene: CensusELF4 
Somatic Mutations in Cancer : COSMICELF4 
CONAN: Copy Number AnalysisELF4 
Mutations and Diseases : HGMDELF4
OMIM300775   
GENETests300775   
Disease Genetic AssociationELF4
Huge Navigator ELF4 [HugePedia]  ELF4 [HugeCancerGEM]
Genomic VariantsELF4  ELF4 [DGVbeta]
snp3D : Map Gene to Disease2000
General knowledge
Homologs : HomoloGeneELF4
Homology/Alignments : Family Browser (UCSC)ELF4
Phylogenetic Trees/Animal Genes : TreeFamELF4
Chemical/Protein Interactions : CTD2000
Chemical/Pharm GKB GenePA27747
Clinical trialELF4
Cancer Resource (Charite)ENSG00000102034
Ontology : AmiGOnatural killer cell proliferation  NK T cell proliferation  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  PML body  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBInatural killer cell proliferation  NK T cell proliferation  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  PML body  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  positive regulation of transcription from RNA polymerase II promoter  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneELF4
iHOPELF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:48:26 CEST 2013

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