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ELF5 (E74 like ETS transcription factor 5)

Identity

Alias_namesE74-like factor 5 (ets domain transcription factor)
Other aliasESE2
HGNC (Hugo) ELF5
LocusID (NCBI) 2001
Atlas_Id 46669
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 34478795 and ends at 34513800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELF5 (11p13) / CAT (11p13)ZFPM2 (8q23.1) / ELF5 (11p13)ELF5 11p13 / CAT 11p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELF5   3320
Cards
Entrez_Gene (NCBI)ELF5  2001  E74 like ETS transcription factor 5
AliasesESE2
GeneCards (Weizmann)ELF5
Ensembl hg19 (Hinxton)ENSG00000135374 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135374 [Gene_View]  chr11:34478795-34513800 [Contig_View]  ELF5 [Vega]
ICGC DataPortalENSG00000135374
TCGA cBioPortalELF5
AceView (NCBI)ELF5
Genatlas (Paris)ELF5
WikiGenes2001
SOURCE (Princeton)ELF5
Genetics Home Reference (NIH)ELF5
Genomic and cartography
GoldenPath hg38 (UCSC)ELF5  -     chr11:34478795-34513800 -  11p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELF5  -     11p13   [Description]    (hg19-Feb_2009)
EnsemblELF5 - 11p13 [CytoView hg19]  ELF5 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIELF5 [Mapview hg19]  ELF5 [Mapview hg38]
OMIM605169   
Gene and transcription
Genbank (Entrez)AF049703 AF115402 AF115403 AK074633 AK075197
RefSeq transcript (Entrez)NM_001243080 NM_001243081 NM_001422 NM_198381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELF5
Cluster EST : UnigeneHs.11713 [ NCBI ]
CGAP (NCI)Hs.11713
Alternative Splicing GalleryENSG00000135374
Gene ExpressionELF5 [ NCBI-GEO ]   ELF5 [ EBI - ARRAY_EXPRESS ]   ELF5 [ SEEK ]   ELF5 [ MEM ]
Gene Expression Viewer (FireBrowse)ELF5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2001
GTEX Portal (Tissue expression)ELF5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKW6
Splice isoforms : SwissVarQ9UKW6
PhosPhoSitePlusQ9UKW6
Domaine pattern : Prosite (Expaxy)ETS_DOMAIN_2 (PS00346)    ETS_DOMAIN_3 (PS50061)    PNT (PS51433)   
Domains : Interpro (EBI)Elf5    Ets_dom    Pointed_dom    SAM/pointed    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Ets (PF00178)    SAM_PNT (PF02198)   
Domain families : Pfam (NCBI)pfam00178    pfam02198   
Domain families : Smart (EMBL)ETS (SM00413)  SAM_PNT (SM00251)  
Conserved Domain (NCBI)ELF5
DMDM Disease mutations2001
Blocks (Seattle)ELF5
PDB (SRS)1WWX   
PDB (PDBSum)1WWX   
PDB (IMB)1WWX   
PDB (RSDB)1WWX   
Structural Biology KnowledgeBase1WWX   
SCOP (Structural Classification of Proteins)1WWX   
CATH (Classification of proteins structures)1WWX   
SuperfamilyQ9UKW6
Human Protein AtlasENSG00000135374
Peptide AtlasQ9UKW6
HPRD05525
IPIIPI00099434   IPI00163115   IPI00384023   IPI00855920   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKW6
IntAct (EBI)Q9UKW6
FunCoupENSG00000135374
BioGRIDELF5
STRING (EMBL)ELF5
ZODIACELF5
Ontologies - Pathways
QuickGOQ9UKW6
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ectodermal cell fate commitment  nucleus  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell proliferation  cell differentiation  somatic stem cell population maintenance  negative regulation of cell differentiation  positive regulation of transcription from RNA polymerase II promoter  mammary gland epithelial cell differentiation  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  ectodermal cell fate commitment  nucleus  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  cell proliferation  cell differentiation  somatic stem cell population maintenance  negative regulation of cell differentiation  positive regulation of transcription from RNA polymerase II promoter  mammary gland epithelial cell differentiation  
Pathways : KEGGProlactin signaling pathway   
NDEx NetworkELF5
Atlas of Cancer Signalling NetworkELF5
Wikipedia pathwaysELF5
Orthology - Evolution
OrthoDB2001
GeneTree (enSembl)ENSG00000135374
Phylogenetic Trees/Animal Genes : TreeFamELF5
HOVERGENQ9UKW6
HOGENOMQ9UKW6
Homologs : HomoloGeneELF5
Homology/Alignments : Family Browser (UCSC)ELF5
Gene fusions - Rearrangements
Fusion : MitelmanZFPM2/ELF5 [8q23.1/11p13]  [t(8;11)(q23;p13)]  
Fusion: TCGAELF5 11p13 CAT 11p13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELF5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELF5
dbVarELF5
ClinVarELF5
1000_GenomesELF5 
Exome Variant ServerELF5
ExAC (Exome Aggregation Consortium)ELF5 (select the gene name)
Genetic variants : HAPMAP2001
Genomic Variants (DGV)ELF5 [DGVbeta]
DECIPHERELF5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELF5 
Mutations
ICGC Data PortalELF5 
TCGA Data PortalELF5 
Broad Tumor PortalELF5
OASIS PortalELF5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELF5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELF5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELF5
DgiDB (Drug Gene Interaction Database)ELF5
DoCM (Curated mutations)ELF5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELF5 (select a term)
intoGenELF5
Cancer3DELF5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605169   
Orphanet
MedgenELF5
Genetic Testing Registry ELF5
NextProtQ9UKW6 [Medical]
TSGene2001
GENETestsELF5
Target ValidationELF5
Huge Navigator ELF5 [HugePedia]
snp3D : Map Gene to Disease2001
BioCentury BCIQELF5
ClinGenELF5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2001
Chemical/Pharm GKB GenePA27748
Clinical trialELF5
Miscellaneous
canSAR (ICR)ELF5 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELF5
EVEXELF5
GoPubMedELF5
iHOPELF5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:26 CEST 2017

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