Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1)

Identity

Alias_namesPPP1R28
extracellular leucine-rich repeat and fibronectin type III containing 1
protein phosphatase 1, regulatory subunit 28
Other alias
HGNC (Hugo) ELFN1
LocusID (NCBI) 392617
Atlas_Id 62791
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1709162 and ends at 1747954 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELFN1   33154
Cards
Entrez_Gene (NCBI)ELFN1  392617  extracellular leucine rich repeat and fibronectin type III domain containing 1
AliasesPPP1R28
GeneCards (Weizmann)ELFN1
Ensembl hg19 (Hinxton)ENSG00000225968 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000225968 [Gene_View]  chr7:1709162-1747954 [Contig_View]  ELFN1 [Vega]
ICGC DataPortalENSG00000225968
TCGA cBioPortalELFN1
AceView (NCBI)ELFN1
Genatlas (Paris)ELFN1
WikiGenes392617
SOURCE (Princeton)ELFN1
Genetics Home Reference (NIH)ELFN1
Genomic and cartography
GoldenPath hg38 (UCSC)ELFN1  -     chr7:1709162-1747954 +  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELFN1  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblELFN1 - 7p22.3 [CytoView hg19]  ELFN1 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIELFN1 [Mapview hg19]  ELFN1 [Mapview hg38]
OMIM614964   
Gene and transcription
Genbank (Entrez)AI962473 BF434584 DR001365
RefSeq transcript (Entrez)NM_001128636
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELFN1
Cluster EST : UnigeneHs.42896 [ NCBI ]
CGAP (NCI)Hs.42896
Alternative Splicing GalleryENSG00000225968
Gene ExpressionELFN1 [ NCBI-GEO ]   ELFN1 [ EBI - ARRAY_EXPRESS ]   ELFN1 [ SEEK ]   ELFN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ELFN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392617
GTEX Portal (Tissue expression)ELFN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7U0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7U0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7U0
Splice isoforms : SwissVarP0C7U0
PhosPhoSitePlusP0C7U0
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRCT (SM00082)  
Conserved Domain (NCBI)ELFN1
DMDM Disease mutations392617
Blocks (Seattle)ELFN1
SuperfamilyP0C7U0
Human Protein AtlasENSG00000225968
Peptide AtlasP0C7U0
IPIIPI00248596   
Protein Interaction databases
DIP (DOE-UCLA)P0C7U0
IntAct (EBI)P0C7U0
FunCoupENSG00000225968
BioGRIDELFN1
STRING (EMBL)ELFN1
ZODIACELFN1
Ontologies - Pathways
QuickGOP0C7U0
Ontology : AmiGOprotein phosphatase inhibitor activity  negative regulation of phosphatase activity  integral component of membrane  phosphatase binding  dendrite  synapse organization  excitatory synapse  extracellular exosome  
Ontology : EGO-EBIprotein phosphatase inhibitor activity  negative regulation of phosphatase activity  integral component of membrane  phosphatase binding  dendrite  synapse organization  excitatory synapse  extracellular exosome  
NDEx NetworkELFN1
Atlas of Cancer Signalling NetworkELFN1
Wikipedia pathwaysELFN1
Orthology - Evolution
OrthoDB392617
GeneTree (enSembl)ENSG00000225968
Phylogenetic Trees/Animal Genes : TreeFamELFN1
HOVERGENP0C7U0
HOGENOMP0C7U0
Homologs : HomoloGeneELFN1
Homology/Alignments : Family Browser (UCSC)ELFN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELFN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELFN1
dbVarELFN1
ClinVarELFN1
1000_GenomesELFN1 
Exome Variant ServerELFN1
ExAC (Exome Aggregation Consortium)ELFN1 (select the gene name)
Genetic variants : HAPMAP392617
Genomic Variants (DGV)ELFN1 [DGVbeta]
DECIPHERELFN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELFN1 
Mutations
ICGC Data PortalELFN1 
TCGA Data PortalELFN1 
Broad Tumor PortalELFN1
OASIS PortalELFN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELFN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELFN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELFN1
DgiDB (Drug Gene Interaction Database)ELFN1
DoCM (Curated mutations)ELFN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELFN1 (select a term)
intoGenELFN1
Cancer3DELFN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614964   
Orphanet
MedgenELFN1
Genetic Testing Registry ELFN1
NextProtP0C7U0 [Medical]
TSGene392617
GENETestsELFN1
Target ValidationELFN1
Huge Navigator ELFN1 [HugePedia]
snp3D : Map Gene to Disease392617
BioCentury BCIQELFN1
ClinGenELFN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392617
Chemical/Pharm GKB GenePA162385031
Clinical trialELFN1
Miscellaneous
canSAR (ICR)ELFN1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELFN1
EVEXELFN1
GoPubMedELFN1
iHOPELFN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.