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ELMOD1 (ELMO/CED-12 domain containing 1)

Identity

Alias_namesELMO/CED-12 domain containing 1
Alias_symbol (synonym)DKFZp547C176
Other alias-
HGNC (Hugo) ELMOD1
LocusID (NCBI) 55531
Atlas_Id 62797
Location 11q22.3  [Link to chromosome band 11q22]
Location_base_pair Starts at 107461817 and ends at 107537505 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ELMOD1 (11q22.3) / HPS3 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELMOD1   25334
Cards
Entrez_Gene (NCBI)ELMOD1  55531  ELMO/CED-12 domain containing 1
Aliases
GeneCards (Weizmann)ELMOD1
Ensembl hg19 (Hinxton)ENSG00000110675 [Gene_View]  chr11:107461817-107537505 [Contig_View]  ELMOD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000110675 [Gene_View]  chr11:107461817-107537505 [Contig_View]  ELMOD1 [Vega]
ICGC DataPortalENSG00000110675
TCGA cBioPortalELMOD1
AceView (NCBI)ELMOD1
Genatlas (Paris)ELMOD1
WikiGenes55531
SOURCE (Princeton)ELMOD1
Genetics Home Reference (NIH)ELMOD1
Genomic and cartography
GoldenPath hg19 (UCSC)ELMOD1  -     chr11:107461817-107537505 +  11q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ELMOD1  -     11q22.3   [Description]    (hg38-Dec_2013)
EnsemblELMOD1 - 11q22.3 [CytoView hg19]  ELMOD1 - 11q22.3 [CytoView hg38]
Mapping of homologs : NCBIELMOD1 [Mapview hg19]  ELMOD1 [Mapview hg38]
OMIM615456   
Gene and transcription
Genbank (Entrez)AA450353 AK054794 AK297351 AK303689 AL359601
RefSeq transcript (Entrez)NM_001130037 NM_001308018 NM_018712
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)ELMOD1
Cluster EST : UnigeneHs.495779 [ NCBI ]
CGAP (NCI)Hs.495779
Alternative Splicing GalleryENSG00000110675
Gene ExpressionELMOD1 [ NCBI-GEO ]   ELMOD1 [ EBI - ARRAY_EXPRESS ]   ELMOD1 [ SEEK ]   ELMOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ELMOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55531
GTEX Portal (Tissue expression)ELMOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N336   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N336  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N336
Splice isoforms : SwissVarQ8N336
PhosPhoSitePlusQ8N336
Domaine pattern : Prosite (Expaxy)ELMO (PS51335)   
Domains : Interpro (EBI)ELMOD1    Engulfment_cell_motility_ELMO   
Domain families : Pfam (Sanger)ELMO_CED12 (PF04727)   
Domain families : Pfam (NCBI)pfam04727   
Conserved Domain (NCBI)ELMOD1
DMDM Disease mutations55531
Blocks (Seattle)ELMOD1
SuperfamilyQ8N336
Human Protein AtlasENSG00000110675
Peptide AtlasQ8N336
HPRD10934
IPIIPI00166479   IPI00984252   IPI00909624   
Protein Interaction databases
DIP (DOE-UCLA)Q8N336
IntAct (EBI)Q8N336
FunCoupENSG00000110675
BioGRIDELMOD1
STRING (EMBL)ELMOD1
ZODIACELMOD1
Ontologies - Pathways
QuickGOQ8N336
Ontology : AmiGOGTPase activator activity  nucleoplasm  cytoplasm  regulation of protein stability  positive regulation of GTPase activity  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIGTPase activator activity  nucleoplasm  cytoplasm  regulation of protein stability  positive regulation of GTPase activity  positive regulation of protein targeting to mitochondrion  
NDEx NetworkELMOD1
Atlas of Cancer Signalling NetworkELMOD1
Wikipedia pathwaysELMOD1
Orthology - Evolution
OrthoDB55531
GeneTree (enSembl)ENSG00000110675
Phylogenetic Trees/Animal Genes : TreeFamELMOD1
HOVERGENQ8N336
HOGENOMQ8N336
Homologs : HomoloGeneELMOD1
Homology/Alignments : Family Browser (UCSC)ELMOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELMOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELMOD1
dbVarELMOD1
ClinVarELMOD1
1000_GenomesELMOD1 
Exome Variant ServerELMOD1
ExAC (Exome Aggregation Consortium)ELMOD1 (select the gene name)
Genetic variants : HAPMAP55531
Genomic Variants (DGV)ELMOD1 [DGVbeta]
DECIPHER (Syndromes)11:107461817-107537505  ENSG00000110675
CONAN: Copy Number AnalysisELMOD1 
Mutations
ICGC Data PortalELMOD1 
TCGA Data PortalELMOD1 
Broad Tumor PortalELMOD1
OASIS PortalELMOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELMOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELMOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELMOD1
DgiDB (Drug Gene Interaction Database)ELMOD1
DoCM (Curated mutations)ELMOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELMOD1 (select a term)
intoGenELMOD1
Cancer3DELMOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615456   
Orphanet
MedgenELMOD1
Genetic Testing Registry ELMOD1
NextProtQ8N336 [Medical]
TSGene55531
GENETestsELMOD1
Huge Navigator ELMOD1 [HugePedia]
snp3D : Map Gene to Disease55531
BioCentury BCIQELMOD1
ClinGenELMOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55531
Chemical/Pharm GKB GenePA134903991
Clinical trialELMOD1
Miscellaneous
canSAR (ICR)ELMOD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELMOD1
EVEXELMOD1
GoPubMedELMOD1
iHOPELMOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:45 CET 2017

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