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ELMOD2 (ELMO domain containing 2)

Identity

Alias_namesELMO/CED-12 domain containing 2
Alias_symbol (synonym)MGC10084
Other alias9830169G11Rik
HGNC (Hugo) ELMOD2
LocusID (NCBI) 255520
Atlas_Id 62798
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 140524158 and ends at 140553770 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELMOD2 (4q31.1) / ELMOD2 (4q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELMOD2   28111
Cards
Entrez_Gene (NCBI)ELMOD2  255520  ELMO domain containing 2
Aliases9830169G11Rik
GeneCards (Weizmann)ELMOD2
Ensembl hg19 (Hinxton)ENSG00000179387 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179387 [Gene_View]  chr4:140524158-140553770 [Contig_View]  ELMOD2 [Vega]
ICGC DataPortalENSG00000179387
TCGA cBioPortalELMOD2
AceView (NCBI)ELMOD2
Genatlas (Paris)ELMOD2
WikiGenes255520
SOURCE (Princeton)ELMOD2
Genetics Home Reference (NIH)ELMOD2
Genomic and cartography
GoldenPath hg38 (UCSC)ELMOD2  -     chr4:140524158-140553770 +  4q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELMOD2  -     4q31.1   [Description]    (hg19-Feb_2009)
EnsemblELMOD2 - 4q31.1 [CytoView hg19]  ELMOD2 - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBIELMOD2 [Mapview hg19]  ELMOD2 [Mapview hg38]
OMIM610196   
Gene and transcription
Genbank (Entrez)AK021525 AK093087 AK095357 AK312800 BC015168
RefSeq transcript (Entrez)NM_153702
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELMOD2
Cluster EST : UnigeneHs.677038 [ NCBI ]
CGAP (NCI)Hs.677038
Alternative Splicing GalleryENSG00000179387
Gene ExpressionELMOD2 [ NCBI-GEO ]   ELMOD2 [ EBI - ARRAY_EXPRESS ]   ELMOD2 [ SEEK ]   ELMOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)ELMOD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255520
GTEX Portal (Tissue expression)ELMOD2
Human Protein AtlasENSG00000179387-ELMOD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ81
Splice isoforms : SwissVarQ8IZ81
PhosPhoSitePlusQ8IZ81
Domaine pattern : Prosite (Expaxy)ELMO (PS51335)   
Domains : Interpro (EBI)ELMO_dom    ELMOD2   
Domain families : Pfam (Sanger)ELMO_CED12 (PF04727)   
Domain families : Pfam (NCBI)pfam04727   
Conserved Domain (NCBI)ELMOD2
DMDM Disease mutations255520
Blocks (Seattle)ELMOD2
SuperfamilyQ8IZ81
Human Protein Atlas [tissue]ENSG00000179387-ELMOD2 [tissue]
Peptide AtlasQ8IZ81
HPRD13267
IPIIPI00217918   IPI00968070   IPI00967823   IPI00963815   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ81
IntAct (EBI)Q8IZ81
FunCoupENSG00000179387
BioGRIDELMOD2
STRING (EMBL)ELMOD2
ZODIACELMOD2
Ontologies - Pathways
QuickGOQ8IZ81
Ontology : AmiGOGTPase activator activity  membrane  positive regulation of GTPase activity  regulation of defense response to virus  defense response to virus  
Ontology : EGO-EBIGTPase activator activity  membrane  positive regulation of GTPase activity  regulation of defense response to virus  defense response to virus  
NDEx NetworkELMOD2
Atlas of Cancer Signalling NetworkELMOD2
Wikipedia pathwaysELMOD2
Orthology - Evolution
OrthoDB255520
GeneTree (enSembl)ENSG00000179387
Phylogenetic Trees/Animal Genes : TreeFamELMOD2
HOVERGENQ8IZ81
HOGENOMQ8IZ81
Homologs : HomoloGeneELMOD2
Homology/Alignments : Family Browser (UCSC)ELMOD2
Gene fusions - Rearrangements
Tumor Fusion PortalELMOD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELMOD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELMOD2
dbVarELMOD2
ClinVarELMOD2
1000_GenomesELMOD2 
Exome Variant ServerELMOD2
ExAC (Exome Aggregation Consortium)ENSG00000179387
GNOMAD BrowserENSG00000179387
Genetic variants : HAPMAP255520
Genomic Variants (DGV)ELMOD2 [DGVbeta]
DECIPHERELMOD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELMOD2 
Mutations
ICGC Data PortalELMOD2 
TCGA Data PortalELMOD2 
Broad Tumor PortalELMOD2
OASIS PortalELMOD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELMOD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELMOD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELMOD2
DgiDB (Drug Gene Interaction Database)ELMOD2
DoCM (Curated mutations)ELMOD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELMOD2 (select a term)
intoGenELMOD2
Cancer3DELMOD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610196   
Orphanet
DisGeNETELMOD2
MedgenELMOD2
Genetic Testing Registry ELMOD2
NextProtQ8IZ81 [Medical]
TSGene255520
GENETestsELMOD2
Target ValidationELMOD2
Huge Navigator ELMOD2 [HugePedia]
snp3D : Map Gene to Disease255520
BioCentury BCIQELMOD2
ClinGenELMOD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255520
Chemical/Pharm GKB GenePA134984145
Clinical trialELMOD2
Miscellaneous
canSAR (ICR)ELMOD2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELMOD2
EVEXELMOD2
GoPubMedELMOD2
iHOPELMOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:48 CET 2017

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