Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ELMSAN1 (ELM2 and Myb/SANT domain containing 1)

Identity

Alias_namesC14orf117
C14orf43
chromosome 14 open reading frame 117
chromosome 14 open reading frame 43
Alias_symbol (synonym)LSR68
Other aliasMIDEAS
c14_5541
HGNC (Hugo) ELMSAN1
LocusID (NCBI) 91748
Atlas_Id 62799
Location 14q24.3  [Link to chromosome band 14q24]
Location_base_pair Starts at 73715122 and ends at 73787258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELMSAN1 (14q24.3) / ACOT1 (14q24.3)ELMSAN1 (14q24.3) / NVL (1q42.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELMSAN1   19853
Cards
Entrez_Gene (NCBI)ELMSAN1  91748  ELM2 and Myb/SANT domain containing 1
AliasesC14orf117; C14orf43; LSR68; MIDEAS; 
c14_5541
GeneCards (Weizmann)ELMSAN1
Ensembl hg19 (Hinxton)ENSG00000156030 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156030 [Gene_View]  chr14:73715122-73787258 [Contig_View]  ELMSAN1 [Vega]
ICGC DataPortalENSG00000156030
TCGA cBioPortalELMSAN1
AceView (NCBI)ELMSAN1
Genatlas (Paris)ELMSAN1
WikiGenes91748
SOURCE (Princeton)ELMSAN1
Genetics Home Reference (NIH)ELMSAN1
Genomic and cartography
GoldenPath hg38 (UCSC)ELMSAN1  -     chr14:73715122-73787258 -  14q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELMSAN1  -     14q24.3   [Description]    (hg19-Feb_2009)
EnsemblELMSAN1 - 14q24.3 [CytoView hg19]  ELMSAN1 - 14q24.3 [CytoView hg38]
Mapping of homologs : NCBIELMSAN1 [Mapview hg19]  ELMSAN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024978 AK090424 AK095434 AK127785 AK308604
RefSeq transcript (Entrez)NM_001043318 NM_194278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELMSAN1
Cluster EST : UnigeneHs.594157 [ NCBI ]
CGAP (NCI)Hs.594157
Alternative Splicing GalleryENSG00000156030
Gene ExpressionELMSAN1 [ NCBI-GEO ]   ELMSAN1 [ EBI - ARRAY_EXPRESS ]   ELMSAN1 [ SEEK ]   ELMSAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ELMSAN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91748
GTEX Portal (Tissue expression)ELMSAN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PJG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PJG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PJG2
Splice isoforms : SwissVarQ6PJG2
PhosPhoSitePlusQ6PJG2
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)ELM2_dom    Homeobox-like    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)ELM2 (PF01448)   
Domain families : Pfam (NCBI)pfam01448   
Domain families : Smart (EMBL)ELM2 (SM01189)  SANT (SM00717)  
Conserved Domain (NCBI)ELMSAN1
DMDM Disease mutations91748
Blocks (Seattle)ELMSAN1
SuperfamilyQ6PJG2
Human Protein AtlasENSG00000156030
Peptide AtlasQ6PJG2
HPRD12648
IPIIPI00784739   IPI00847564   IPI00878852   IPI00879168   IPI00879657   
Protein Interaction databases
DIP (DOE-UCLA)Q6PJG2
IntAct (EBI)Q6PJG2
FunCoupENSG00000156030
BioGRIDELMSAN1
STRING (EMBL)ELMSAN1
ZODIACELMSAN1
Ontologies - Pathways
QuickGOQ6PJG2
Ontology : AmiGOhistone deacetylase complex  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription factor complex  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  transcription regulatory region DNA binding  
Ontology : EGO-EBIhistone deacetylase complex  transcription factor activity, sequence-specific DNA binding  nucleoplasm  transcription factor complex  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  transcription regulatory region DNA binding  
NDEx NetworkELMSAN1
Atlas of Cancer Signalling NetworkELMSAN1
Wikipedia pathwaysELMSAN1
Orthology - Evolution
OrthoDB91748
GeneTree (enSembl)ENSG00000156030
Phylogenetic Trees/Animal Genes : TreeFamELMSAN1
HOVERGENQ6PJG2
HOGENOMQ6PJG2
Homologs : HomoloGeneELMSAN1
Homology/Alignments : Family Browser (UCSC)ELMSAN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELMSAN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELMSAN1
dbVarELMSAN1
ClinVarELMSAN1
1000_GenomesELMSAN1 
Exome Variant ServerELMSAN1
ExAC (Exome Aggregation Consortium)ELMSAN1 (select the gene name)
Genetic variants : HAPMAP91748
Genomic Variants (DGV)ELMSAN1 [DGVbeta]
DECIPHERELMSAN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELMSAN1 
Mutations
ICGC Data PortalELMSAN1 
TCGA Data PortalELMSAN1 
Broad Tumor PortalELMSAN1
OASIS PortalELMSAN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELMSAN1
BioMutasearch ELMSAN1
DgiDB (Drug Gene Interaction Database)ELMSAN1
DoCM (Curated mutations)ELMSAN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELMSAN1 (select a term)
intoGenELMSAN1
Cancer3DELMSAN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenELMSAN1
Genetic Testing Registry ELMSAN1
NextProtQ6PJG2 [Medical]
TSGene91748
GENETestsELMSAN1
Target ValidationELMSAN1
Huge Navigator ELMSAN1 [HugePedia]
snp3D : Map Gene to Disease91748
BioCentury BCIQELMSAN1
ClinGenELMSAN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91748
Chemical/Pharm GKB GenePA134877876
Clinical trialELMSAN1
Miscellaneous
canSAR (ICR)ELMSAN1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELMSAN1
EVEXELMSAN1
GoPubMedELMSAN1
iHOPELMSAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:47:01 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.