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ELOA (elongin A)

Identity

Other aliasSIII
SIII p110
TCEB3
TCEB3A
HGNC (Hugo) ELOA
LocusID (NCBI) 6924
Atlas_Id 56652
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 23743366 and ends at 23762059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELOA   11620
Cards
Entrez_Gene (NCBI)ELOA  6924  elongin A
AliasesSIII; SIII; TCEB3; TCEB3A
GeneCards (Weizmann)ELOA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:23743366-23762059 [Contig_View]  ELOA [Vega]
TCGA cBioPortalELOA
AceView (NCBI)ELOA
Genatlas (Paris)ELOA
WikiGenes6924
SOURCE (Princeton)ELOA
Genetics Home Reference (NIH)ELOA
Genomic and cartography
GoldenPath hg38 (UCSC)ELOA  -     chr1:23743366-23762059 +  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOA  -     1p36.11   [Description]    (hg19-Feb_2009)
EnsemblELOA - 1p36.11 [CytoView hg19]  ELOA - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIELOA [Mapview hg19]  ELOA [Mapview hg38]
OMIM600786   
Gene and transcription
Genbank (Entrez)AF070554 AF116729 AK096079 AK310229 AK313079
RefSeq transcript (Entrez)NM_003198
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOA
Cluster EST : UnigeneHs.15535 [ NCBI ]
CGAP (NCI)Hs.15535
Gene ExpressionELOA [ NCBI-GEO ]   ELOA [ EBI - ARRAY_EXPRESS ]   ELOA [ SEEK ]   ELOA [ MEM ]
Gene Expression Viewer (FireBrowse)ELOA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6924
GTEX Portal (Tissue expression)ELOA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14241   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14241  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14241
Splice isoforms : SwissVarQ14241
PhosPhoSitePlusQ14241
Domaine pattern : Prosite (Expaxy)FBOX (PS50181)    TFIIS_N (PS51319)   
Domains : Interpro (EBI)F-box_dom    RNA_pol_II_trans_fac_SIII_A    TFIIS/CRSP70_N_sub    TFIIS/LEDGF_dom_sf    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)ELOA
DMDM Disease mutations6924
Blocks (Seattle)ELOA
PDB (SRS)4HFX   
PDB (PDBSum)4HFX   
PDB (IMB)4HFX   
PDB (RSDB)4HFX   
Structural Biology KnowledgeBase4HFX   
SCOP (Structural Classification of Proteins)4HFX   
CATH (Classification of proteins structures)4HFX   
SuperfamilyQ14241
Peptide AtlasQ14241
IPIIPI00941732   
Protein Interaction databases
DIP (DOE-UCLA)Q14241
IntAct (EBI)Q14241
BioGRIDELOA
STRING (EMBL)ELOA
ZODIACELOA
Ontologies - Pathways
QuickGOQ14241
Ontology : AmiGOprotein binding  extracellular space  nucleoplasm  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  transcription elongation from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  extracellular space  nucleoplasm  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  transcription elongation from RNA polymerase II promoter  
NDEx NetworkELOA
Atlas of Cancer Signalling NetworkELOA
Wikipedia pathwaysELOA
Orthology - Evolution
OrthoDB6924
Phylogenetic Trees/Animal Genes : TreeFamELOA
HOVERGENQ14241
HOGENOMQ14241
Homologs : HomoloGeneELOA
Homology/Alignments : Family Browser (UCSC)ELOA
Gene fusions - Rearrangements
Fusion : QuiverELOA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELOA
dbVarELOA
ClinVarELOA
1000_GenomesELOA 
Exome Variant ServerELOA
Varsome BrowserELOA
Genetic variants : HAPMAP6924
Genomic Variants (DGV)ELOA [DGVbeta]
DECIPHERELOA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOA 
Mutations
ICGC Data PortalELOA 
TCGA Data PortalELOA 
Broad Tumor PortalELOA
OASIS PortalELOA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELOA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELOA
DgiDB (Drug Gene Interaction Database)ELOA
DoCM (Curated mutations)ELOA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOA (select a term)
intoGenELOA
Cancer3DELOA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600786   
Orphanet
DisGeNETELOA
MedgenELOA
Genetic Testing Registry ELOA
NextProtQ14241 [Medical]
TSGene6924
GENETestsELOA
Target ValidationELOA
Huge Navigator ELOA [HugePedia]
snp3D : Map Gene to Disease6924
BioCentury BCIQELOA
ClinGenELOA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6924
Chemical/Pharm GKB GenePA36379
Clinical trialELOA
Miscellaneous
canSAR (ICR)ELOA (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOA
EVEXELOA
GoPubMedELOA
iHOPELOA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:21:04 CEST 2018

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