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ELOA3D (elongin A3 family member D)

Identity

Other aliasELOA3L2
TCEB3CL2
HGNC (Hugo) ELOA3D
LocusID (NCBI) 100506888
Atlas_Id 78651
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 46962768 and ends at 46964644 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELOA3D   33511
Cards
Entrez_Gene (NCBI)ELOA3D  100506888  elongin A3 family member D
AliasesELOA3L2; TCEB3CL2
GeneCards (Weizmann)ELOA3D
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr18:46962768-46964644 [Contig_View]  ELOA3D [Vega]
TCGA cBioPortalELOA3D
AceView (NCBI)ELOA3D
Genatlas (Paris)ELOA3D
WikiGenes100506888
SOURCE (Princeton)ELOA3D
Genetics Home Reference (NIH)ELOA3D
Genomic and cartography
GoldenPath hg38 (UCSC)ELOA3D  -     chr18:46962768-46964644 -  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOA3D  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblELOA3D - 18q21.1 [CytoView hg19]  ELOA3D - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIELOA3D [Mapview hg19]  ELOA3D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242907
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOA3D
Cluster EST : UnigeneHs.729823 [ NCBI ]
CGAP (NCI)Hs.729823
Gene ExpressionELOA3D [ NCBI-GEO ]   ELOA3D [ EBI - ARRAY_EXPRESS ]   ELOA3D [ SEEK ]   ELOA3D [ MEM ]
Gene Expression Viewer (FireBrowse)ELOA3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506888
GTEX Portal (Tissue expression)ELOA3D
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLF2
Splice isoforms : SwissVarA6NLF2
PhosPhoSitePlusA6NLF2
Domaine pattern : Prosite (Expaxy)TFIIS_N (PS51319)   
Domains : Interpro (EBI)RNA_pol_II_trans_fac_SIII_A    TFIIS/CRSP70_N_sub    TFIIS_N   
Domain families : Pfam (Sanger)Elongin_A (PF06881)    Med26 (PF08711)   
Domain families : Pfam (NCBI)pfam06881    pfam08711   
Domain families : Smart (EMBL)TFS2N (SM00509)  
Conserved Domain (NCBI)ELOA3D
DMDM Disease mutations100506888
Blocks (Seattle)ELOA3D
SuperfamilyA6NLF2
Peptide AtlasA6NLF2
Protein Interaction databases
DIP (DOE-UCLA)A6NLF2
IntAct (EBI)A6NLF2
BioGRIDELOA3D
STRING (EMBL)ELOA3D
ZODIACELOA3D
Ontologies - Pathways
QuickGOA6NLF2
Ontology : AmiGOregulation of transcription, DNA-templated  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
Ontology : EGO-EBIregulation of transcription, DNA-templated  transcription elongation from RNA polymerase II promoter  integral component of membrane  elongin complex  
NDEx NetworkELOA3D
Atlas of Cancer Signalling NetworkELOA3D
Wikipedia pathwaysELOA3D
Orthology - Evolution
OrthoDB100506888
Phylogenetic Trees/Animal Genes : TreeFamELOA3D
HOVERGENA6NLF2
HOGENOMA6NLF2
Homologs : HomoloGeneELOA3D
Homology/Alignments : Family Browser (UCSC)ELOA3D
Gene fusions - Rearrangements
Tumor Fusion PortalELOA3D
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOA3D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELOA3D
dbVarELOA3D
ClinVarELOA3D
1000_GenomesELOA3D 
Exome Variant ServerELOA3D
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100506888
Genomic Variants (DGV)ELOA3D [DGVbeta]
DECIPHERELOA3D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOA3D 
Mutations
ICGC Data PortalELOA3D 
TCGA Data PortalELOA3D 
Broad Tumor PortalELOA3D
OASIS PortalELOA3D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELOA3D
BioMutasearch ELOA3D
DgiDB (Drug Gene Interaction Database)ELOA3D
DoCM (Curated mutations)ELOA3D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOA3D (select a term)
intoGenELOA3D
Cancer3DELOA3D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETELOA3D
MedgenELOA3D
Genetic Testing Registry ELOA3D
NextProtA6NLF2 [Medical]
TSGene100506888
GENETestsELOA3D
Target ValidationELOA3D
Huge Navigator ELOA3D [HugePedia]
snp3D : Map Gene to Disease100506888
BioCentury BCIQELOA3D
ClinGenELOA3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506888
Chemical/Pharm GKB GenePA162405429
Clinical trialELOA3D
Miscellaneous
canSAR (ICR)ELOA3D (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOA3D
EVEXELOA3D
GoPubMedELOA3D
iHOPELOA3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:29 CET 2017

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