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ELOB (elongin B)

Identity

Other aliasSIII
TCEB2
HGNC (Hugo) ELOB
LocusID (NCBI) 6923
Atlas_Id 56640
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2771414 and ends at 2777296 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELOB   11619
Cards
Entrez_Gene (NCBI)ELOB  6923  elongin B
AliasesSIII; TCEB2
GeneCards (Weizmann)ELOB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:2771414-2777296 [Contig_View]  ELOB [Vega]
TCGA cBioPortalELOB
AceView (NCBI)ELOB
Genatlas (Paris)ELOB
WikiGenes6923
SOURCE (Princeton)ELOB
Genetics Home Reference (NIH)ELOB
Genomic and cartography
GoldenPath hg38 (UCSC)ELOB  -     chr16:2771414-2777296 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOB  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblELOB - 16p13.3 [CytoView hg19]  ELOB - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIELOB [Mapview hg19]  ELOB [Mapview hg38]
OMIM600787   
Gene and transcription
Genbank (Entrez)AI191983 BC013306 BC065000 BF967495 BG329435
RefSeq transcript (Entrez)NM_007108 NM_207013
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOB
Cluster EST : UnigeneHs.172772 [ NCBI ]
CGAP (NCI)Hs.172772
Gene ExpressionELOB [ NCBI-GEO ]   ELOB [ EBI - ARRAY_EXPRESS ]   ELOB [ SEEK ]   ELOB [ MEM ]
Gene Expression Viewer (FireBrowse)ELOB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6923
GTEX Portal (Tissue expression)ELOB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15370   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15370  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15370
Splice isoforms : SwissVarQ15370
PhosPhoSitePlusQ15370
Domaine pattern : Prosite (Expaxy)UBIQUITIN_2 (PS50053)   
Domains : Interpro (EBI)Ubiquitin-rel_dom    Ubiquitin_dom   
Domain families : Pfam (Sanger)ubiquitin (PF00240)   
Domain families : Pfam (NCBI)pfam00240   
Domain families : Smart (EMBL)UBQ (SM00213)  
Conserved Domain (NCBI)ELOB
DMDM Disease mutations6923
Blocks (Seattle)ELOB
PDB (SRS)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (PDBSum)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (IMB)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (RSDB)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
Structural Biology KnowledgeBase1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
SCOP (Structural Classification of Proteins)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
CATH (Classification of proteins structures)1LM8    1LQB    1VCB    2C9W    2IZV    2JZ3    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
SuperfamilyQ15370
Peptide AtlasQ15370
IPIIPI00026670   IPI00410162   IPI00917694   
Protein Interaction databases
DIP (DOE-UCLA)Q15370
IntAct (EBI)Q15370
BioGRIDELOB
STRING (EMBL)ELOB
ZODIACELOB
Ontologies - Pathways
QuickGOQ15370
Ontology : AmiGOprotein binding  nucleoplasm  cytosol  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein complex assembly  protein ubiquitination  VCB complex  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  elongin complex  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytosol  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  protein complex assembly  protein ubiquitination  VCB complex  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  regulation of transcription from RNA polymerase II promoter in response to hypoxia  extracellular exosome  elongin complex  
NDEx NetworkELOB
Atlas of Cancer Signalling NetworkELOB
Wikipedia pathwaysELOB
Orthology - Evolution
OrthoDB6923
Phylogenetic Trees/Animal Genes : TreeFamELOB
HOVERGENQ15370
HOGENOMQ15370
Homologs : HomoloGeneELOB
Homology/Alignments : Family Browser (UCSC)ELOB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELOB
dbVarELOB
ClinVarELOB
1000_GenomesELOB 
Exome Variant ServerELOB
ExAC (Exome Aggregation Consortium)ELOB (select the gene name)
Genetic variants : HAPMAP6923
Genomic Variants (DGV)ELOB [DGVbeta]
DECIPHERELOB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOB 
Mutations
ICGC Data PortalELOB 
TCGA Data PortalELOB 
Broad Tumor PortalELOB
OASIS PortalELOB [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELOB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELOB
DgiDB (Drug Gene Interaction Database)ELOB
DoCM (Curated mutations)ELOB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOB (select a term)
intoGenELOB
Cancer3DELOB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600787   
Orphanet
MedgenELOB
Genetic Testing Registry ELOB
NextProtQ15370 [Medical]
TSGene6923
GENETestsELOB
Target ValidationELOB
Huge Navigator ELOB [HugePedia]
snp3D : Map Gene to Disease6923
BioCentury BCIQELOB
ClinGenELOB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6923
Chemical/Pharm GKB GenePA36378
Clinical trialELOB
Miscellaneous
canSAR (ICR)ELOB (select the gene name)
Probes
Litterature
PubMed173 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOB
EVEXELOB
GoPubMedELOB
iHOPELOB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:52:32 CEST 2017

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