Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ELOC (elongin C)

Identity

Other aliasSIII
TCEB1
HGNC (Hugo) ELOC
LocusID (NCBI) 6921
Atlas_Id 56669
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 73945138 and ends at 73972287 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELOC   11617
Cards
Entrez_Gene (NCBI)ELOC  6921  elongin C
AliasesSIII; TCEB1
GeneCards (Weizmann)ELOC
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:73945138-73972287 [Contig_View]  ELOC [Vega]
TCGA cBioPortalELOC
AceView (NCBI)ELOC
Genatlas (Paris)ELOC
WikiGenes6921
SOURCE (Princeton)ELOC
Genetics Home Reference (NIH)ELOC
Genomic and cartography
GoldenPath hg38 (UCSC)ELOC  -     chr8:73945138-73972287 -  8q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOC  -     8q21.11   [Description]    (hg19-Feb_2009)
EnsemblELOC - 8q21.11 [CytoView hg19]  ELOC - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBIELOC [Mapview hg19]  ELOC [Mapview hg38]
OMIM600788   
Gene and transcription
Genbank (Entrez)AK057889 AL832244 BC013809 BC093065 BC100028
RefSeq transcript (Entrez)NM_001204857 NM_001204858 NM_001204859 NM_001204860 NM_001204861 NM_001204862 NM_001204863 NM_001204864 NM_005648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOC
Cluster EST : UnigeneHs.731928 [ NCBI ]
CGAP (NCI)Hs.731928
Gene ExpressionELOC [ NCBI-GEO ]   ELOC [ EBI - ARRAY_EXPRESS ]   ELOC [ SEEK ]   ELOC [ MEM ]
Gene Expression Viewer (FireBrowse)ELOC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6921
GTEX Portal (Tissue expression)ELOC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15369   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15369  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15369
Splice isoforms : SwissVarQ15369
PhosPhoSitePlusQ15369
Domains : Interpro (EBI)SKP1-like    SKP1/BTB/POZ    Skp1_comp_POZ   
Domain families : Pfam (Sanger)Skp1_POZ (PF03931)   
Domain families : Pfam (NCBI)pfam03931   
Domain families : Smart (EMBL)Skp1 (SM00512)  
Conserved Domain (NCBI)ELOC
DMDM Disease mutations6921
Blocks (Seattle)ELOC
PDB (SRS)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (PDBSum)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (IMB)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
PDB (RSDB)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
Structural Biology KnowledgeBase1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
SCOP (Structural Classification of Proteins)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
CATH (Classification of proteins structures)1LM8    1LQB    1VCB    2C9W    2IZV    2MA9    3DCG    3ZKJ    3ZNG    3ZRC    3ZRF    3ZTC    3ZTD    3ZUN    4AJY    4AWJ    4B95    4B9K    4BKS    4BKT    4N9F    4W9C    4W9D    4W9E    4W9F    4W9G    4W9H    4W9I    4W9J    4W9K    4W9L    4WQO    5BO4    5LLI   
SuperfamilyQ15369
Peptide AtlasQ15369
IPIIPI00300341   IPI00791185   IPI00982721   IPI00973924   
Protein Interaction databases
DIP (DOE-UCLA)Q15369
IntAct (EBI)Q15369
BioGRIDELOC
STRING (EMBL)ELOC
ZODIACELOC
Ontologies - Pathways
QuickGOQ15369
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleoplasm  cytosol  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  viral process  positive regulation of transcription elongation from RNA polymerase II promoter  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  regulation of transcription from RNA polymerase II promoter in response to hypoxia  elongin complex  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleoplasm  cytosol  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  viral process  positive regulation of transcription elongation from RNA polymerase II promoter  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  regulation of transcription from RNA polymerase II promoter in response to hypoxia  elongin complex  
NDEx NetworkELOC
Atlas of Cancer Signalling NetworkELOC
Wikipedia pathwaysELOC
Orthology - Evolution
OrthoDB6921
Phylogenetic Trees/Animal Genes : TreeFamELOC
HOVERGENQ15369
HOGENOMQ15369
Homologs : HomoloGeneELOC
Homology/Alignments : Family Browser (UCSC)ELOC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELOC
dbVarELOC
ClinVarELOC
1000_GenomesELOC 
Exome Variant ServerELOC
ExAC (Exome Aggregation Consortium)ELOC (select the gene name)
Genetic variants : HAPMAP6921
Genomic Variants (DGV)ELOC [DGVbeta]
DECIPHERELOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOC 
Mutations
ICGC Data PortalELOC 
TCGA Data PortalELOC 
Broad Tumor PortalELOC
OASIS PortalELOC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELOC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELOC
DgiDB (Drug Gene Interaction Database)ELOC
DoCM (Curated mutations)ELOC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOC (select a term)
intoGenELOC
Cancer3DELOC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600788   
Orphanet
MedgenELOC
Genetic Testing Registry ELOC
NextProtQ15369 [Medical]
TSGene6921
GENETestsELOC
Target ValidationELOC
Huge Navigator ELOC [HugePedia]
snp3D : Map Gene to Disease6921
BioCentury BCIQELOC
ClinGenELOC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6921
Chemical/Pharm GKB GenePA36376
Clinical trialELOC
Miscellaneous
canSAR (ICR)ELOC (select the gene name)
Probes
Litterature
PubMed201 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOC
EVEXELOC
GoPubMedELOC
iHOPELOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:06:51 CEST 2017

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