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ELOF1 (elongation factor 1 homolog)

Identity

Alias (NCBI)ELF1
HGNC (Hugo) ELOF1
HGNC Alias symbMGC4549
ELF1
HGNC Previous nameelongation factor 1 homolog (ELF1, S. cerevisiae)
 elongation factor 1 homolog (S. cerevisiae)
LocusID (NCBI) 84337
Atlas_Id 62800
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11553043 and ends at 11559236 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELOF1 (19p13.2) / KIF1A (2q37.3)ELOF1 (19p13.2) / RDH8 (19p13.2)SEMA6A (5q23.1) / ELOF1 (19p13.2)
USP32 (17q23.1) / ELOF1 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(17;19)(q23;p13) USP32/ELOF1
ELOF1/RDH8 (19p13)

External links

Nomenclature
HGNC (Hugo)ELOF1   28691
Cards
Entrez_Gene (NCBI)ELOF1    elongation factor 1 homolog
AliasesELF1
GeneCards (Weizmann)ELOF1
Ensembl hg19 (Hinxton)ENSG00000130165 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130165 [Gene_View]  ENSG00000130165 [Sequence]  chr19:11553043-11559236 [Contig_View]  ELOF1 [Vega]
ICGC DataPortalENSG00000130165
TCGA cBioPortalELOF1
AceView (NCBI)ELOF1
Genatlas (Paris)ELOF1
SOURCE (Princeton)ELOF1
Genetics Home Reference (NIH)ELOF1
Genomic and cartography
GoldenPath hg38 (UCSC)ELOF1  -     chr19:11553043-11559236 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOF1  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathELOF1 - 19p13.2 [CytoView hg19]  ELOF1 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000130165
genome Data Viewer NCBIELOF1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA428339 AK001171 AK097850 BC007516 BG424379
RefSeq transcript (Entrez)NM_001363673 NM_001363674 NM_001363675 NM_032377
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOF1
Alternative Splicing GalleryENSG00000130165
Gene ExpressionELOF1 [ NCBI-GEO ]   ELOF1 [ EBI - ARRAY_EXPRESS ]   ELOF1 [ SEEK ]   ELOF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ELOF1 [ Firebrowse - Broad ]
GenevisibleExpression of ELOF1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84337
GTEX Portal (Tissue expression)ELOF1
Human Protein AtlasENSG00000130165-ELOF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60002   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60002  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60002
Splice isoforms : SwissVarP60002
PhosPhoSitePlusP60002
Domains : Interpro (EBI)Elf1    T_Elf1_sf   
Domain families : Pfam (Sanger)Elf1 (PF05129)   
Domain families : Pfam (NCBI)pfam05129   
Conserved Domain (NCBI)ELOF1
Blocks (Seattle)ELOF1
SuperfamilyP60002
Human Protein Atlas [tissue]ENSG00000130165-ELOF1 [tissue]
Peptide AtlasP60002
HPRD14639
IPIIPI00063650   
Protein Interaction databases
DIP (DOE-UCLA)P60002
IntAct (EBI)P60002
BioGRIDELOF1
STRING (EMBL)ELOF1
ZODIACELOF1
Ontologies - Pathways
QuickGOP60002
Ontology : AmiGORNA polymerase II complex binding  protein binding  transcription elongation from RNA polymerase II promoter  transcription elongation factor complex  metal ion binding  chromatin-mediated maintenance of transcription  
Ontology : EGO-EBIRNA polymerase II complex binding  protein binding  transcription elongation from RNA polymerase II promoter  transcription elongation factor complex  metal ion binding  chromatin-mediated maintenance of transcription  
NDEx NetworkELOF1
Atlas of Cancer Signalling NetworkELOF1
Wikipedia pathwaysELOF1
Orthology - Evolution
OrthoDB84337
GeneTree (enSembl)ENSG00000130165
Phylogenetic Trees/Animal Genes : TreeFamELOF1
HOGENOMP60002
Homologs : HomoloGeneELOF1
Homology/Alignments : Family Browser (UCSC)ELOF1
Gene fusions - Rearrangements
Fusion : QuiverELOF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOF1 [hg38]
dbVarELOF1
ClinVarELOF1
MonarchELOF1
1000_GenomesELOF1 
Exome Variant ServerELOF1
GNOMAD BrowserENSG00000130165
Varsome BrowserELOF1
Genomic Variants (DGV)ELOF1 [DGVbeta]
DECIPHERELOF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOF1 
Mutations
ICGC Data PortalELOF1 
TCGA Data PortalELOF1 
Broad Tumor PortalELOF1
OASIS PortalELOF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELOF1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DELOF1
Mutations and Diseases : HGMDELOF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELOF1
DgiDB (Drug Gene Interaction Database)ELOF1
DoCM (Curated mutations)ELOF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOF1 (select a term)
intoGenELOF1
Cancer3DELOF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETELOF1
MedgenELOF1
Genetic Testing Registry ELOF1
NextProtP60002 [Medical]
GENETestsELOF1
Target ValidationELOF1
Huge Navigator ELOF1 [HugePedia]
ClinGenELOF1
Clinical trials, drugs, therapy
MyCancerGenomeELOF1
Protein Interactions : CTD
Pharm GKB GenePA142671911
Clinical trialELOF1
Miscellaneous
canSAR (ICR)ELOF1 (select the gene name)
HarmonizomeELOF1
DataMed IndexELOF1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOF1
EVEXELOF1
GoPubMedELOF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:52:49 CET 2020
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