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ELOVL6 (ELOVL fatty acid elongase 6)

Identity

Alias_namesELOVL family member 6
Alias_symbol (synonym)FLJ23378
MGC5487
LCE
Other aliasFACE
FAE
HGNC (Hugo) ELOVL6
LocusID (NCBI) 79071
Atlas_Id 40446
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 110049073 and ends at 110198615 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELOVL6 (4q25) / ENPEP (4q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELOVL6   15829
Cards
Entrez_Gene (NCBI)ELOVL6  79071  ELOVL fatty acid elongase 6
AliasesFACE; FAE; LCE
GeneCards (Weizmann)ELOVL6
Ensembl hg19 (Hinxton)ENSG00000170522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170522 [Gene_View]  chr4:110049073-110198615 [Contig_View]  ELOVL6 [Vega]
ICGC DataPortalENSG00000170522
TCGA cBioPortalELOVL6
AceView (NCBI)ELOVL6
Genatlas (Paris)ELOVL6
WikiGenes79071
SOURCE (Princeton)ELOVL6
Genetics Home Reference (NIH)ELOVL6
Genomic and cartography
GoldenPath hg38 (UCSC)ELOVL6  -     chr4:110049073-110198615 -  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELOVL6  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblELOVL6 - 4q25 [CytoView hg19]  ELOVL6 - 4q25 [CytoView hg38]
Mapping of homologs : NCBIELOVL6 [Mapview hg19]  ELOVL6 [Mapview hg38]
OMIM611546   
Gene and transcription
Genbank (Entrez)AK027031 AK074813 AK074882 BC001305 BE539688
RefSeq transcript (Entrez)NM_001130721 NM_024090
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELOVL6
Cluster EST : UnigeneHs.652828 [ NCBI ]
CGAP (NCI)Hs.652828
Alternative Splicing GalleryENSG00000170522
Gene ExpressionELOVL6 [ NCBI-GEO ]   ELOVL6 [ EBI - ARRAY_EXPRESS ]   ELOVL6 [ SEEK ]   ELOVL6 [ MEM ]
Gene Expression Viewer (FireBrowse)ELOVL6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79071
GTEX Portal (Tissue expression)ELOVL6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H5J4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H5J4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H5J4
Splice isoforms : SwissVarQ9H5J4
PhosPhoSitePlusQ9H5J4
Domaine pattern : Prosite (Expaxy)ELO (PS01188)   
Domains : Interpro (EBI)ELO_CS    ELO_fam    ELOVL6   
Domain families : Pfam (Sanger)ELO (PF01151)   
Domain families : Pfam (NCBI)pfam01151   
Conserved Domain (NCBI)ELOVL6
DMDM Disease mutations79071
Blocks (Seattle)ELOVL6
SuperfamilyQ9H5J4
Human Protein AtlasENSG00000170522
Peptide AtlasQ9H5J4
HPRD13269
IPIIPI00031695   IPI00964211   IPI00967901   IPI00965387   
Protein Interaction databases
DIP (DOE-UCLA)Q9H5J4
IntAct (EBI)Q9H5J4
FunCoupENSG00000170522
BioGRIDELOVL6
STRING (EMBL)ELOVL6
ZODIACELOVL6
Ontologies - Pathways
QuickGOQ9H5J4
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  fatty acid elongase activity  fatty acid elongation, saturated fatty acid  integral component of endoplasmic reticulum membrane  long-chain fatty-acyl-CoA biosynthetic process  long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  3-oxo-arachidoyl-CoA synthase activity  3-oxo-cerotoyl-CoA synthase activity  3-oxo-lignoceronyl-CoA synthase activity  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  fatty acid elongase activity  fatty acid elongation, saturated fatty acid  integral component of endoplasmic reticulum membrane  long-chain fatty-acyl-CoA biosynthetic process  long-chain fatty acid biosynthetic process  very long-chain fatty acid biosynthetic process  3-oxo-arachidoyl-CoA synthase activity  3-oxo-cerotoyl-CoA synthase activity  3-oxo-lignoceronyl-CoA synthase activity  
Pathways : KEGGFatty acid elongation    Biosynthesis of unsaturated fatty acids   
NDEx NetworkELOVL6
Atlas of Cancer Signalling NetworkELOVL6
Wikipedia pathwaysELOVL6
Orthology - Evolution
OrthoDB79071
GeneTree (enSembl)ENSG00000170522
Phylogenetic Trees/Animal Genes : TreeFamELOVL6
HOVERGENQ9H5J4
HOGENOMQ9H5J4
Homologs : HomoloGeneELOVL6
Homology/Alignments : Family Browser (UCSC)ELOVL6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELOVL6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELOVL6
dbVarELOVL6
ClinVarELOVL6
1000_GenomesELOVL6 
Exome Variant ServerELOVL6
ExAC (Exome Aggregation Consortium)ELOVL6 (select the gene name)
Genetic variants : HAPMAP79071
Genomic Variants (DGV)ELOVL6 [DGVbeta]
DECIPHERELOVL6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELOVL6 
Mutations
ICGC Data PortalELOVL6 
TCGA Data PortalELOVL6 
Broad Tumor PortalELOVL6
OASIS PortalELOVL6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELOVL6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELOVL6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELOVL6
DgiDB (Drug Gene Interaction Database)ELOVL6
DoCM (Curated mutations)ELOVL6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELOVL6 (select a term)
intoGenELOVL6
Cancer3DELOVL6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611546   
Orphanet
MedgenELOVL6
Genetic Testing Registry ELOVL6
NextProtQ9H5J4 [Medical]
TSGene79071
GENETestsELOVL6
Target ValidationELOVL6
Huge Navigator ELOVL6 [HugePedia]
snp3D : Map Gene to Disease79071
BioCentury BCIQELOVL6
ClinGenELOVL6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79071
Chemical/Pharm GKB GenePA134939058
Clinical trialELOVL6
Miscellaneous
canSAR (ICR)ELOVL6 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELOVL6
EVEXELOVL6
GoPubMedELOVL6
iHOPELOVL6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:30 CEST 2017

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