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ELP3 (elongator acetyltransferase complex subunit 3)

Identity

Alias_nameselongation protein 3 homolog (S. cerevisiae)
Alias_symbol (synonym)FLJ10422
KAT9
Other alias
HGNC (Hugo) ELP3
LocusID (NCBI) 55140
Atlas_Id 54282
Location 8p21.1  [Link to chromosome band 8p21]
Location_base_pair Starts at 28093067 and ends at 28191152 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELP3 (8p21.1) / RBPMS (8p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELP3   20696
Cards
Entrez_Gene (NCBI)ELP3  55140  elongator acetyltransferase complex subunit 3
AliasesKAT9
GeneCards (Weizmann)ELP3
Ensembl hg19 (Hinxton)ENSG00000134014 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134014 [Gene_View]  chr8:28093067-28191152 [Contig_View]  ELP3 [Vega]
ICGC DataPortalENSG00000134014
TCGA cBioPortalELP3
AceView (NCBI)ELP3
Genatlas (Paris)ELP3
WikiGenes55140
SOURCE (Princeton)ELP3
Genetics Home Reference (NIH)ELP3
Genomic and cartography
GoldenPath hg38 (UCSC)ELP3  -     chr8:28093067-28191152 +  8p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELP3  -     8p21.1   [Description]    (hg19-Feb_2009)
EnsemblELP3 - 8p21.1 [CytoView hg19]  ELP3 - 8p21.1 [CytoView hg38]
Mapping of homologs : NCBIELP3 [Mapview hg19]  ELP3 [Mapview hg38]
OMIM612722   
Gene and transcription
Genbank (Entrez)AK001284 AK022626 AK223047 AK293424 AK295574
RefSeq transcript (Entrez)NM_001284220 NM_001284222 NM_001284224 NM_001284225 NM_001284226 NM_018091
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ELP3
Cluster EST : UnigeneHs.491336 [ NCBI ]
CGAP (NCI)Hs.491336
Alternative Splicing GalleryENSG00000134014
Gene ExpressionELP3 [ NCBI-GEO ]   ELP3 [ EBI - ARRAY_EXPRESS ]   ELP3 [ SEEK ]   ELP3 [ MEM ]
Gene Expression Viewer (FireBrowse)ELP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55140
GTEX Portal (Tissue expression)ELP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9T3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9T3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9T3
Splice isoforms : SwissVarQ9H9T3
PhosPhoSitePlusQ9H9T3
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Elp3/MiaB/NifB    GNAT_dom    Hist_AcTrfase_ELP3    Radical_SAM_C    rSAM    rSAM_horseshoe   
Domain families : Pfam (Sanger)Acetyltransf_1 (PF00583)    Radical_SAM (PF04055)    Radical_SAM_C (PF16199)   
Domain families : Pfam (NCBI)pfam00583    pfam04055    pfam16199   
Domain families : Smart (EMBL)Elp3 (SM00729)  
Conserved Domain (NCBI)ELP3
DMDM Disease mutations55140
Blocks (Seattle)ELP3
SuperfamilyQ9H9T3
Human Protein AtlasENSG00000134014
Peptide AtlasQ9H9T3
HPRD10936
IPIIPI00165477   IPI00844099   IPI00975731   IPI01013172   IPI00984487   IPI00844135   IPI00974071   IPI01013424   IPI00979686   IPI00974548   IPI00977546   IPI00983164   IPI00980360   IPI00983679   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9T3
IntAct (EBI)Q9H9T3
FunCoupENSG00000134014
BioGRIDELP3
STRING (EMBL)ELP3
ZODIACELP3
Ontologies - Pathways
QuickGOQ9H9T3
Ontology : AmiGOhistone acetyltransferase complex  RNA polymerase II core binding  neuron migration  protein binding  nucleolus  cytoplasm  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  central nervous system development  transcription elongation factor complex  phosphorylase kinase regulator activity  H3 histone acetyltransferase activity  H4 histone acetyltransferase activity  positive regulation of cell migration  Elongator holoenzyme complex  histone H3 acetylation  histone H4 acetylation  regulation of protein kinase activity  metal ion binding  iron-sulfur cluster binding  
Ontology : EGO-EBIhistone acetyltransferase complex  RNA polymerase II core binding  neuron migration  protein binding  nucleolus  cytoplasm  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase II promoter  transcription elongation from RNA polymerase II promoter  central nervous system development  transcription elongation factor complex  phosphorylase kinase regulator activity  H3 histone acetyltransferase activity  H4 histone acetyltransferase activity  positive regulation of cell migration  Elongator holoenzyme complex  histone H3 acetylation  histone H4 acetylation  regulation of protein kinase activity  metal ion binding  iron-sulfur cluster binding  
NDEx NetworkELP3
Atlas of Cancer Signalling NetworkELP3
Wikipedia pathwaysELP3
Orthology - Evolution
OrthoDB55140
GeneTree (enSembl)ENSG00000134014
Phylogenetic Trees/Animal Genes : TreeFamELP3
HOVERGENQ9H9T3
HOGENOMQ9H9T3
Homologs : HomoloGeneELP3
Homology/Alignments : Family Browser (UCSC)ELP3
Gene fusions - Rearrangements
Fusion : MitelmanELP3/RBPMS [8p21.1/8p12]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELP3
dbVarELP3
ClinVarELP3
1000_GenomesELP3 
Exome Variant ServerELP3
ExAC (Exome Aggregation Consortium)ELP3 (select the gene name)
Genetic variants : HAPMAP55140
Genomic Variants (DGV)ELP3 [DGVbeta]
DECIPHERELP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELP3 
Mutations
ICGC Data PortalELP3 
TCGA Data PortalELP3 
Broad Tumor PortalELP3
OASIS PortalELP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDELP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ELP3
DgiDB (Drug Gene Interaction Database)ELP3
DoCM (Curated mutations)ELP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELP3 (select a term)
intoGenELP3
Cancer3DELP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612722   
Orphanet
MedgenELP3
Genetic Testing Registry ELP3
NextProtQ9H9T3 [Medical]
TSGene55140
GENETestsELP3
Huge Navigator ELP3 [HugePedia]
snp3D : Map Gene to Disease55140
BioCentury BCIQELP3
ClinGenELP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55140
Chemical/Pharm GKB GenePA134992603
Clinical trialELP3
Miscellaneous
canSAR (ICR)ELP3 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELP3
EVEXELP3
GoPubMedELP3
iHOPELP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:14:37 CEST 2017

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