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ELP6 (elongator acetyltransferase complex subunit 6)

Identity

Alias (NCBI)C3orf75
TMEM103
HGNC (Hugo) ELP6
HGNC Alias symbFLJ20211
HGNC Previous nameTMEM103
 C3orf75
HGNC Previous nametransmembrane protein 103
 chromosome 3 open reading frame 75
LocusID (NCBI) 54859
Atlas_Id 53112
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 47495640 and ends at 47513345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PTPN1 (20q13.13) / ELP6 (3p21.31)PTPN23 (3p21.31) / ELP6 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ELP6   25976
Cards
Entrez_Gene (NCBI)ELP6    elongator acetyltransferase complex subunit 6
AliasesC3orf75; TMEM103
GeneCards (Weizmann)ELP6
Ensembl hg19 (Hinxton)ENSG00000163832 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163832 [Gene_View]  ENSG00000163832 [Sequence]  chr3:47495640-47513345 [Contig_View]  ELP6 [Vega]
ICGC DataPortalENSG00000163832
TCGA cBioPortalELP6
AceView (NCBI)ELP6
Genatlas (Paris)ELP6
SOURCE (Princeton)ELP6
Genetics Home Reference (NIH)ELP6
Genomic and cartography
GoldenPath hg38 (UCSC)ELP6  -     chr3:47495640-47513345 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ELP6  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathELP6 - 3p21.31 [CytoView hg19]  ELP6 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000163832
Genome Data Viewer NCBIELP6 [Mapview hg19]  
OMIM615020   
Gene and transcription
Genbank (Entrez)AK000218 AK225721 AK298202 BC000623 BC014204
RefSeq transcript (Entrez)NM_001031703 NM_001363957 NM_017713
Consensus coding sequences : CCDS (NCBI)ELP6
Gene ExpressionELP6 [ NCBI-GEO ]   ELP6 [ EBI - ARRAY_EXPRESS ]   ELP6 [ SEEK ]   ELP6 [ MEM ]
Gene Expression Viewer (FireBrowse)ELP6 [ Firebrowse - Broad ]
GenevisibleExpression of ELP6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54859
GTEX Portal (Tissue expression)ELP6
Human Protein AtlasENSG00000163832-ELP6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0PNE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0PNE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0PNE2
PhosPhoSitePlusQ0PNE2
Domains : Interpro (EBI)ELP6   
Domain families : Pfam (Sanger)ELP6 (PF09807)   
Domain families : Pfam (NCBI)pfam09807   
Conserved Domain (NCBI)ELP6
SuperfamilyQ0PNE2
AlphaFold pdb e-kbQ0PNE2   
Human Protein Atlas [tissue]ENSG00000163832-ELP6 [tissue]
HPRD07884
Protein Interaction databases
DIP (DOE-UCLA)Q0PNE2
IntAct (EBI)Q0PNE2
BioGRIDELP6
STRING (EMBL)ELP6
ZODIACELP6
Ontologies - Pathways
QuickGOQ0PNE2
Ontology : AmiGOtRNA wobble uridine modification  molecular_function  nucleus  cytosol  biological_process  positive regulation of cell migration  elongator holoenzyme complex  elongator holoenzyme complex  
Ontology : EGO-EBItRNA wobble uridine modification  molecular_function  nucleus  cytosol  biological_process  positive regulation of cell migration  elongator holoenzyme complex  elongator holoenzyme complex  
NDEx NetworkELP6
Atlas of Cancer Signalling NetworkELP6
Wikipedia pathwaysELP6
Orthology - Evolution
OrthoDB54859
GeneTree (enSembl)ENSG00000163832
Phylogenetic Trees/Animal Genes : TreeFamELP6
Homologs : HomoloGeneELP6
Homology/Alignments : Family Browser (UCSC)ELP6
Gene fusions - Rearrangements
Fusion : MitelmanPTPN1/ELP6 [20q13.13/3p21.31]  
Fusion : QuiverELP6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELP6
dbVarELP6
ClinVarELP6
MonarchELP6
1000_GenomesELP6 
Exome Variant ServerELP6
GNOMAD BrowserENSG00000163832
Varsome BrowserELP6
ACMGELP6 variants
VarityQ0PNE2
Genomic Variants (DGV)ELP6 [DGVbeta]
DECIPHERELP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisELP6 
Mutations
ICGC Data PortalELP6 
TCGA Data PortalELP6 
Broad Tumor PortalELP6
OASIS PortalELP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICELP6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DELP6
Mutations and Diseases : HGMDELP6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaELP6
DgiDB (Drug Gene Interaction Database)ELP6
DoCM (Curated mutations)ELP6
CIViC (Clinical Interpretations of Variants in Cancer)ELP6
Cancer3DELP6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615020   
Orphanet
DisGeNETELP6
MedgenELP6
Genetic Testing Registry ELP6
NextProtQ0PNE2 [Medical]
GENETestsELP6
Target ValidationELP6
Huge Navigator ELP6 [HugePedia]
ClinGenELP6
Clinical trials, drugs, therapy
MyCancerGenomeELP6
Protein Interactions : CTDELP6
Pharm GKB GenePA164717260
PharosQ0PNE2
Clinical trialELP6
Miscellaneous
canSAR (ICR)ELP6
HarmonizomeELP6
DataMed IndexELP6
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXELP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:08:06 CEST 2021

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