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ELP6 (elongator acetyltransferase complex subunit 6)

Identity

Alias_namesTMEM103
C3orf75
transmembrane protein 103
chromosome 3 open reading frame 75
Alias_symbol (synonym)FLJ20211
Other alias
HGNC (Hugo) ELP6
LocusID (NCBI) 54859
Atlas_Id 53112
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 47537130 and ends at 47555199 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PTPN1 (20q13.13) / ELP6 (3p21.31)PTPN23 (3p21.31) / ELP6 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ELP6   25976
Cards
Entrez_Gene (NCBI)ELP6  54859  elongator acetyltransferase complex subunit 6
AliasesC3orf75; TMEM103
GeneCards (Weizmann)ELP6
Ensembl hg19 (Hinxton)ENSG00000163832 [Gene_View]  chr3:47537130-47555199 [Contig_View]  ELP6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163832 [Gene_View]  chr3:47537130-47555199 [Contig_View]  ELP6 [Vega]
ICGC DataPortalENSG00000163832
TCGA cBioPortalELP6
AceView (NCBI)ELP6
Genatlas (Paris)ELP6
WikiGenes54859
SOURCE (Princeton)ELP6
Genetics Home Reference (NIH)ELP6
Genomic and cartography
GoldenPath hg19 (UCSC)ELP6  -     chr3:47537130-47555199 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ELP6  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblELP6 - 3p21.31 [CytoView hg19]  ELP6 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIELP6 [Mapview hg19]  ELP6 [Mapview hg38]
OMIM615020   
Gene and transcription
Genbank (Entrez)AK000218 AK225721 AK298202 BC000623 BC014204
RefSeq transcript (Entrez)NM_001031703 NM_017713
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)ELP6
Cluster EST : UnigeneHs.311100 [ NCBI ]
CGAP (NCI)Hs.311100
Alternative Splicing GalleryENSG00000163832
Gene ExpressionELP6 [ NCBI-GEO ]   ELP6 [ EBI - ARRAY_EXPRESS ]   ELP6 [ SEEK ]   ELP6 [ MEM ]
Gene Expression Viewer (FireBrowse)ELP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54859
GTEX Portal (Tissue expression)ELP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0PNE2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0PNE2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0PNE2
Splice isoforms : SwissVarQ0PNE2
PhosPhoSitePlusQ0PNE2
Domains : Interpro (EBI)ELP6   
Domain families : Pfam (Sanger)ELP6 (PF09807)   
Domain families : Pfam (NCBI)pfam09807   
Conserved Domain (NCBI)ELP6
DMDM Disease mutations54859
Blocks (Seattle)ELP6
SuperfamilyQ0PNE2
Human Protein AtlasENSG00000163832
Peptide AtlasQ0PNE2
HPRD07884
IPIIPI00872492   IPI00396268   IPI00926641   IPI00909205   IPI00926354   IPI00926537   IPI00925958   IPI00926154   IPI00953175   IPI00927274   
Protein Interaction databases
DIP (DOE-UCLA)Q0PNE2
IntAct (EBI)Q0PNE2
FunCoupENSG00000163832
BioGRIDELP6
STRING (EMBL)ELP6
ZODIACELP6
Ontologies - Pathways
QuickGOQ0PNE2
Ontology : AmiGOmolecular_function  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  positive regulation of cell migration  Elongator holoenzyme complex  
Ontology : EGO-EBImolecular_function  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  positive regulation of cell migration  Elongator holoenzyme complex  
NDEx NetworkELP6
Atlas of Cancer Signalling NetworkELP6
Wikipedia pathwaysELP6
Orthology - Evolution
OrthoDB54859
GeneTree (enSembl)ENSG00000163832
Phylogenetic Trees/Animal Genes : TreeFamELP6
HOVERGENQ0PNE2
HOGENOMQ0PNE2
Homologs : HomoloGeneELP6
Homology/Alignments : Family Browser (UCSC)ELP6
Gene fusions - Rearrangements
Fusion : MitelmanPTPN1/ELP6 [20q13.13/3p21.31]  [t(3;20)(p21;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerELP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ELP6
dbVarELP6
ClinVarELP6
1000_GenomesELP6 
Exome Variant ServerELP6
ExAC (Exome Aggregation Consortium)ELP6 (select the gene name)
Genetic variants : HAPMAP54859
Genomic Variants (DGV)ELP6 [DGVbeta]
DECIPHER (Syndromes)3:47537130-47555199  ENSG00000163832
CONAN: Copy Number AnalysisELP6 
Mutations
ICGC Data PortalELP6 
TCGA Data PortalELP6 
Broad Tumor PortalELP6
OASIS PortalELP6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDELP6
BioMutasearch ELP6
DgiDB (Drug Gene Interaction Database)ELP6
DoCM (Curated mutations)ELP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ELP6 (select a term)
intoGenELP6
Cancer3DELP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615020   
Orphanet
MedgenELP6
Genetic Testing Registry ELP6
NextProtQ0PNE2 [Medical]
TSGene54859
GENETestsELP6
Huge Navigator ELP6 [HugePedia]
snp3D : Map Gene to Disease54859
BioCentury BCIQELP6
ClinGenELP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54859
Chemical/Pharm GKB GenePA164717260
Clinical trialELP6
Miscellaneous
canSAR (ICR)ELP6 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineELP6
EVEXELP6
GoPubMedELP6
iHOPELP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:00:03 CEST 2017

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