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EMB (embigin)

Identity

Alias_namesembigin homolog (mouse)
Alias_symbol (synonym)MGC71745
Other aliasGP70
HGNC (Hugo) EMB
LocusID (NCBI) 133418
Atlas_Id 50617
Location 5q11.1  [Link to chromosome band 5q11]
Location_base_pair Starts at 50396197 and ends at 50441400 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EMB (5q11.1) / GYG2 (Xp22.33)EMB (5q11.1) / KIAA1147 (7q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMB   30465
Cards
Entrez_Gene (NCBI)EMB  133418  embigin
AliasesGP70
GeneCards (Weizmann)EMB
Ensembl hg19 (Hinxton)ENSG00000170571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170571 [Gene_View]  chr5:50396197-50441400 [Contig_View]  EMB [Vega]
ICGC DataPortalENSG00000170571
TCGA cBioPortalEMB
AceView (NCBI)EMB
Genatlas (Paris)EMB
WikiGenes133418
SOURCE (Princeton)EMB
Genetics Home Reference (NIH)EMB
Genomic and cartography
GoldenPath hg38 (UCSC)EMB  -     chr5:50396197-50441400 -  5q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMB  -     5q11.1   [Description]    (hg19-Feb_2009)
EnsemblEMB - 5q11.1 [CytoView hg19]  EMB - 5q11.1 [CytoView hg38]
Mapping of homologs : NCBIEMB [Mapview hg19]  EMB [Mapview hg38]
OMIM615669   
Gene and transcription
Genbank (Entrez)AK300860 AK304226 BC059398 DC309453 JF432793
RefSeq transcript (Entrez)NM_198449
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMB
Cluster EST : UnigeneHs.561411 [ NCBI ]
CGAP (NCI)Hs.561411
Alternative Splicing GalleryENSG00000170571
Gene ExpressionEMB [ NCBI-GEO ]   EMB [ EBI - ARRAY_EXPRESS ]   EMB [ SEEK ]   EMB [ MEM ]
Gene Expression Viewer (FireBrowse)EMB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133418
GTEX Portal (Tissue expression)EMB
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCB8
Splice isoforms : SwissVarQ6PCB8
PhosPhoSitePlusQ6PCB8
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Embigin    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Immunoglobulin   
Domain families : Pfam (Sanger)I-set (PF07679)    ig (PF00047)   
Domain families : Pfam (NCBI)pfam07679    pfam00047   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)EMB
DMDM Disease mutations133418
Blocks (Seattle)EMB
SuperfamilyQ6PCB8
Human Protein AtlasENSG00000170571
Peptide AtlasQ6PCB8
HPRD13271
IPIIPI00394808   IPI00964892   IPI00964005   IPI00968251   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCB8
IntAct (EBI)Q6PCB8
FunCoupENSG00000170571
BioGRIDEMB
STRING (EMBL)EMB
ZODIACEMB
Ontologies - Pathways
QuickGOQ6PCB8
Ontology : AmiGOplasma membrane  integral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  cell junction  plasma membrane lactate transport  synapse  
Ontology : EGO-EBIplasma membrane  integral component of plasma membrane  monocarboxylic acid transmembrane transporter activity  cell junction  plasma membrane lactate transport  synapse  
NDEx NetworkEMB
Atlas of Cancer Signalling NetworkEMB
Wikipedia pathwaysEMB
Orthology - Evolution
OrthoDB133418
GeneTree (enSembl)ENSG00000170571
Phylogenetic Trees/Animal Genes : TreeFamEMB
HOVERGENQ6PCB8
HOGENOMQ6PCB8
Homologs : HomoloGeneEMB
Homology/Alignments : Family Browser (UCSC)EMB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMB
dbVarEMB
ClinVarEMB
1000_GenomesEMB 
Exome Variant ServerEMB
ExAC (Exome Aggregation Consortium)EMB (select the gene name)
Genetic variants : HAPMAP133418
Genomic Variants (DGV)EMB [DGVbeta]
DECIPHEREMB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMB 
Mutations
ICGC Data PortalEMB 
TCGA Data PortalEMB 
Broad Tumor PortalEMB
OASIS PortalEMB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEMB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEMB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EMB
DgiDB (Drug Gene Interaction Database)EMB
DoCM (Curated mutations)EMB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMB (select a term)
intoGenEMB
Cancer3DEMB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615669   
Orphanet
MedgenEMB
Genetic Testing Registry EMB
NextProtQ6PCB8 [Medical]
TSGene133418
GENETestsEMB
Target ValidationEMB
Huge Navigator EMB [HugePedia]
snp3D : Map Gene to Disease133418
BioCentury BCIQEMB
ClinGenEMB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133418
Chemical/Pharm GKB GenePA134917460
Clinical trialEMB
Miscellaneous
canSAR (ICR)EMB (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMB
EVEXEMB
GoPubMedEMB
iHOPEMB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:31 CEST 2017

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