Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EMC10 (ER membrane protein complex subunit 10)

Identity

Alias_namesC19orf63
chromosome 19 open reading frame 63
Alias_symbol (synonym)INM02
HSS1
HSM1
Other alias
HGNC (Hugo) EMC10
LocusID (NCBI) 284361
Atlas_Id 53950
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 50476477 and ends at 50483526 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EMC10 (19q13.33) / MBOAT7 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC10   27609
Cards
Entrez_Gene (NCBI)EMC10  284361  ER membrane protein complex subunit 10
AliasesC19orf63; HSM1; HSS1
GeneCards (Weizmann)EMC10
Ensembl hg19 (Hinxton)ENSG00000161671 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161671 [Gene_View]  chr19:50476477-50483526 [Contig_View]  EMC10 [Vega]
ICGC DataPortalENSG00000161671
TCGA cBioPortalEMC10
AceView (NCBI)EMC10
Genatlas (Paris)EMC10
WikiGenes284361
SOURCE (Princeton)EMC10
Genetics Home Reference (NIH)EMC10
Genomic and cartography
GoldenPath hg38 (UCSC)EMC10  -     chr19:50476477-50483526 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC10  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblEMC10 - 19q13.33 [CytoView hg19]  EMC10 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIEMC10 [Mapview hg19]  EMC10 [Mapview hg38]
OMIM614545   
Gene and transcription
Genbank (Entrez)AL512761 AY194293 AY358710 AY761095 AY761097
RefSeq transcript (Entrez)NM_175063 NM_206538
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC10
Cluster EST : UnigeneHs.515550 [ NCBI ]
CGAP (NCI)Hs.515550
Alternative Splicing GalleryENSG00000161671
Gene ExpressionEMC10 [ NCBI-GEO ]   EMC10 [ EBI - ARRAY_EXPRESS ]   EMC10 [ SEEK ]   EMC10 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284361
GTEX Portal (Tissue expression)EMC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5UCC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5UCC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5UCC4
Splice isoforms : SwissVarQ5UCC4
PhosPhoSitePlusQ5UCC4
Domains : Interpro (EBI)Emc10   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EMC10
DMDM Disease mutations284361
Blocks (Seattle)EMC10
SuperfamilyQ5UCC4
Human Protein AtlasENSG00000161671
Peptide AtlasQ5UCC4
HPRD14153
IPIIPI00419642   IPI00384722   IPI00880178   IPI00744558   IPI00921178   
Protein Interaction databases
DIP (DOE-UCLA)Q5UCC4
IntAct (EBI)Q5UCC4
FunCoupENSG00000161671
BioGRIDEMC10
STRING (EMBL)EMC10
ZODIACEMC10
Ontologies - Pathways
QuickGOQ5UCC4
Ontology : AmiGOextracellular region  integral component of membrane  ER membrane protein complex  
Ontology : EGO-EBIextracellular region  integral component of membrane  ER membrane protein complex  
NDEx NetworkEMC10
Atlas of Cancer Signalling NetworkEMC10
Wikipedia pathwaysEMC10
Orthology - Evolution
OrthoDB284361
GeneTree (enSembl)ENSG00000161671
Phylogenetic Trees/Animal Genes : TreeFamEMC10
HOVERGENQ5UCC4
HOGENOMQ5UCC4
Homologs : HomoloGeneEMC10
Homology/Alignments : Family Browser (UCSC)EMC10
Gene fusions - Rearrangements
Fusion : MitelmanEMC10/MBOAT7 [19q13.33/19q13.42]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC10
dbVarEMC10
ClinVarEMC10
1000_GenomesEMC10 
Exome Variant ServerEMC10
ExAC (Exome Aggregation Consortium)EMC10 (select the gene name)
Genetic variants : HAPMAP284361
Genomic Variants (DGV)EMC10 [DGVbeta]
DECIPHEREMC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC10 
Mutations
ICGC Data PortalEMC10 
TCGA Data PortalEMC10 
Broad Tumor PortalEMC10
OASIS PortalEMC10 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEMC10
BioMutasearch EMC10
DgiDB (Drug Gene Interaction Database)EMC10
DoCM (Curated mutations)EMC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC10 (select a term)
intoGenEMC10
Cancer3DEMC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614545   
Orphanet
MedgenEMC10
Genetic Testing Registry EMC10
NextProtQ5UCC4 [Medical]
TSGene284361
GENETestsEMC10
Target ValidationEMC10
Huge Navigator EMC10 [HugePedia]
snp3D : Map Gene to Disease284361
BioCentury BCIQEMC10
ClinGenEMC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284361
Chemical/Pharm GKB GenePA162378790
Clinical trialEMC10
Miscellaneous
canSAR (ICR)EMC10 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC10
EVEXEMC10
GoPubMedEMC10
iHOPEMC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:06:53 CEST 2017

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