Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EMC3 (ER membrane protein complex subunit 3)

Identity

Alias_namesTMEM111
transmembrane protein 111
Other aliasPOB
HGNC (Hugo) EMC3
LocusID (NCBI) 55831
Atlas_Id 62811
Location 3p25.3  [Link to chromosome band 3p25]
Location_base_pair Starts at 9962680 and ends at 10011248 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC3   23999
Cards
Entrez_Gene (NCBI)EMC3  55831  ER membrane protein complex subunit 3
AliasesPOB; TMEM111
GeneCards (Weizmann)EMC3
Ensembl hg19 (Hinxton)ENSG00000125037 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125037 [Gene_View]  chr3:9962680-10011248 [Contig_View]  EMC3 [Vega]
ICGC DataPortalENSG00000125037
TCGA cBioPortalEMC3
AceView (NCBI)EMC3
Genatlas (Paris)EMC3
WikiGenes55831
SOURCE (Princeton)EMC3
Genetics Home Reference (NIH)EMC3
Genomic and cartography
GoldenPath hg38 (UCSC)EMC3  -     chr3:9962680-10011248 -  3p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC3  -     3p25.3   [Description]    (hg19-Feb_2009)
EnsemblEMC3 - 3p25.3 [CytoView hg19]  EMC3 - 3p25.3 [CytoView hg38]
Mapping of homologs : NCBIEMC3 [Mapview hg19]  EMC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF157321 AK172843 AK222953 AK312008 BC010883
RefSeq transcript (Entrez)NM_018447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC3
Cluster EST : UnigeneHs.662766 [ NCBI ]
CGAP (NCI)Hs.662766
Alternative Splicing GalleryENSG00000125037
Gene ExpressionEMC3 [ NCBI-GEO ]   EMC3 [ EBI - ARRAY_EXPRESS ]   EMC3 [ SEEK ]   EMC3 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55831
GTEX Portal (Tissue expression)EMC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0I2
Splice isoforms : SwissVarQ9P0I2
PhosPhoSitePlusQ9P0I2
Domains : Interpro (EBI)EMC3    EMC3/TMCO1   
Domain families : Pfam (Sanger)DUF106 (PF01956)   
Domain families : Pfam (NCBI)pfam01956   
Domain families : Smart (EMBL)DUF106 (SM01415)  
Conserved Domain (NCBI)EMC3
DMDM Disease mutations55831
Blocks (Seattle)EMC3
SuperfamilyQ9P0I2
Human Protein AtlasENSG00000125037
Peptide AtlasQ9P0I2
HPRD17426
IPIIPI00020472   IPI00607849   IPI00926169   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0I2
IntAct (EBI)Q9P0I2
FunCoupENSG00000125037
BioGRIDEMC3
STRING (EMBL)EMC3
ZODIACEMC3
Ontologies - Pathways
QuickGOQ9P0I2
Ontology : AmiGOmolecular_function  biological_process  integral component of membrane  protein folding in endoplasmic reticulum  ER membrane protein complex  
Ontology : EGO-EBImolecular_function  biological_process  integral component of membrane  protein folding in endoplasmic reticulum  ER membrane protein complex  
NDEx NetworkEMC3
Atlas of Cancer Signalling NetworkEMC3
Wikipedia pathwaysEMC3
Orthology - Evolution
OrthoDB55831
GeneTree (enSembl)ENSG00000125037
Phylogenetic Trees/Animal Genes : TreeFamEMC3
HOVERGENQ9P0I2
HOGENOMQ9P0I2
Homologs : HomoloGeneEMC3
Homology/Alignments : Family Browser (UCSC)EMC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC3
dbVarEMC3
ClinVarEMC3
1000_GenomesEMC3 
Exome Variant ServerEMC3
ExAC (Exome Aggregation Consortium)EMC3 (select the gene name)
Genetic variants : HAPMAP55831
Genomic Variants (DGV)EMC3 [DGVbeta]
DECIPHEREMC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC3 
Mutations
ICGC Data PortalEMC3 
TCGA Data PortalEMC3 
Broad Tumor PortalEMC3
OASIS PortalEMC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEMC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEMC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EMC3
DgiDB (Drug Gene Interaction Database)EMC3
DoCM (Curated mutations)EMC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC3 (select a term)
intoGenEMC3
Cancer3DEMC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEMC3
Genetic Testing Registry EMC3
NextProtQ9P0I2 [Medical]
TSGene55831
GENETestsEMC3
Target ValidationEMC3
Huge Navigator EMC3 [HugePedia]
snp3D : Map Gene to Disease55831
BioCentury BCIQEMC3
ClinGenEMC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55831
Chemical/Pharm GKB GenePA142670762
Clinical trialEMC3
Miscellaneous
canSAR (ICR)EMC3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC3
EVEXEMC3
GoPubMedEMC3
iHOPEMC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.