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EMC4 (ER membrane protein complex subunit 4)

Identity

Alias_namesTMEM85
transmembrane protein 85
Alias_symbol (synonym)FLJ90746
MGC24415
PIG17
Other alias
HGNC (Hugo) EMC4
LocusID (NCBI) 51234
Atlas_Id 62813
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34517198 and ends at 34522366 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC4   28032
Cards
Entrez_Gene (NCBI)EMC4  51234  ER membrane protein complex subunit 4
AliasesPIG17; TMEM85
GeneCards (Weizmann)EMC4
Ensembl hg19 (Hinxton)ENSG00000128463 [Gene_View]  chr15:34517198-34522366 [Contig_View]  EMC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128463 [Gene_View]  chr15:34517198-34522366 [Contig_View]  EMC4 [Vega]
ICGC DataPortalENSG00000128463
TCGA cBioPortalEMC4
AceView (NCBI)EMC4
Genatlas (Paris)EMC4
WikiGenes51234
SOURCE (Princeton)EMC4
Genetics Home Reference (NIH)EMC4
Genomic and cartography
GoldenPath hg19 (UCSC)EMC4  -     chr15:34517198-34522366 +  15q14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EMC4  -     15q14   [Description]    (hg38-Dec_2013)
EnsemblEMC4 - 15q14 [CytoView hg19]  EMC4 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIEMC4 [Mapview hg19]  EMC4 [Mapview hg38]
OMIM616245   
Gene and transcription
Genbank (Entrez)AF151018 AK075227 AK290524 AK296184 AY336092
RefSeq transcript (Entrez)NM_001286420 NM_016454
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)EMC4
Cluster EST : UnigeneHs.250905 [ NCBI ]
CGAP (NCI)Hs.250905
Alternative Splicing GalleryENSG00000128463
Gene ExpressionEMC4 [ NCBI-GEO ]   EMC4 [ EBI - ARRAY_EXPRESS ]   EMC4 [ SEEK ]   EMC4 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51234
GTEX Portal (Tissue expression)EMC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5J8M3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5J8M3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5J8M3
Splice isoforms : SwissVarQ5J8M3
PhosPhoSitePlusQ5J8M3
Domains : Interpro (EBI)DUF1077_TMEM85   
Domain families : Pfam (Sanger)DUF1077 (PF06417)   
Domain families : Pfam (NCBI)pfam06417   
Conserved Domain (NCBI)EMC4
DMDM Disease mutations51234
Blocks (Seattle)EMC4
SuperfamilyQ5J8M3
Human Protein AtlasENSG00000128463
Peptide AtlasQ5J8M3
HPRD14233
IPIIPI00009320   IPI00031499   IPI00791782   
Protein Interaction databases
DIP (DOE-UCLA)Q5J8M3
IntAct (EBI)Q5J8M3
FunCoupENSG00000128463
BioGRIDEMC4
STRING (EMBL)EMC4
ZODIACEMC4
Ontologies - Pathways
QuickGOQ5J8M3
Ontology : AmiGOapoptotic process  integral component of membrane  ER membrane protein complex  
Ontology : EGO-EBIapoptotic process  integral component of membrane  ER membrane protein complex  
NDEx NetworkEMC4
Atlas of Cancer Signalling NetworkEMC4
Wikipedia pathwaysEMC4
Orthology - Evolution
OrthoDB51234
GeneTree (enSembl)ENSG00000128463
Phylogenetic Trees/Animal Genes : TreeFamEMC4
HOVERGENQ5J8M3
HOGENOMQ5J8M3
Homologs : HomoloGeneEMC4
Homology/Alignments : Family Browser (UCSC)EMC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC4
dbVarEMC4
ClinVarEMC4
1000_GenomesEMC4 
Exome Variant ServerEMC4
ExAC (Exome Aggregation Consortium)EMC4 (select the gene name)
Genetic variants : HAPMAP51234
Genomic Variants (DGV)EMC4 [DGVbeta]
DECIPHER (Syndromes)15:34517198-34522366  ENSG00000128463
CONAN: Copy Number AnalysisEMC4 
Mutations
ICGC Data PortalEMC4 
TCGA Data PortalEMC4 
Broad Tumor PortalEMC4
OASIS PortalEMC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEMC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEMC4
BioMutasearch EMC4
DgiDB (Drug Gene Interaction Database)EMC4
DoCM (Curated mutations)EMC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC4 (select a term)
intoGenEMC4
Cancer3DEMC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616245   
Orphanet
MedgenEMC4
Genetic Testing Registry EMC4
NextProtQ5J8M3 [Medical]
TSGene51234
GENETestsEMC4
Huge Navigator EMC4 [HugePedia]
snp3D : Map Gene to Disease51234
BioCentury BCIQEMC4
ClinGenEMC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51234
Chemical/Pharm GKB GenePA143485634
Clinical trialEMC4
Miscellaneous
canSAR (ICR)EMC4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC4
EVEXEMC4
GoPubMedEMC4
iHOPEMC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:49 CET 2017

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