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EMC6 (ER membrane protein complex subunit 6)

Identity

Alias_namesTMEM93
transmembrane protein 93
Alias_symbol (synonym)MGC2963
Other alias
HGNC (Hugo) EMC6
LocusID (NCBI) 83460
Atlas_Id 62814
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 3668723 and ends at 3669669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EMC6 (17p13.2) / CEACAM19 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC6   28430
Cards
Entrez_Gene (NCBI)EMC6  83460  ER membrane protein complex subunit 6
AliasesTMEM93
GeneCards (Weizmann)EMC6
Ensembl hg19 (Hinxton)ENSG00000127774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000127774 [Gene_View]  chr17:3668723-3669669 [Contig_View]  EMC6 [Vega]
ICGC DataPortalENSG00000127774
TCGA cBioPortalEMC6
AceView (NCBI)EMC6
Genatlas (Paris)EMC6
WikiGenes83460
SOURCE (Princeton)EMC6
Genetics Home Reference (NIH)EMC6
Genomic and cartography
GoldenPath hg38 (UCSC)EMC6  -     chr17:3668723-3669669 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC6  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblEMC6 - 17p13.2 [CytoView hg19]  EMC6 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIEMC6 [Mapview hg19]  EMC6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA161105 BC001409 BM825446 BQ277705 BU931404
RefSeq transcript (Entrez)NM_001014764 NM_031298
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC6
Cluster EST : UnigeneHs.30011 [ NCBI ]
CGAP (NCI)Hs.30011
Alternative Splicing GalleryENSG00000127774
Gene ExpressionEMC6 [ NCBI-GEO ]   EMC6 [ EBI - ARRAY_EXPRESS ]   EMC6 [ SEEK ]   EMC6 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83460
GTEX Portal (Tissue expression)EMC6
Human Protein AtlasENSG00000127774-EMC6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BV81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BV81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BV81
Splice isoforms : SwissVarQ9BV81
PhosPhoSitePlusQ9BV81
Domains : Interpro (EBI)Emc6    Rab5IP_fam   
Domain families : Pfam (Sanger)Rab5ip (PF07019)   
Domain families : Pfam (NCBI)pfam07019   
Conserved Domain (NCBI)EMC6
DMDM Disease mutations83460
Blocks (Seattle)EMC6
SuperfamilyQ9BV81
Human Protein Atlas [tissue]ENSG00000127774-EMC6 [tissue]
Peptide AtlasQ9BV81
HPRD14529
IPIIPI00010427   
Protein Interaction databases
DIP (DOE-UCLA)Q9BV81
IntAct (EBI)Q9BV81
FunCoupENSG00000127774
BioGRIDEMC6
STRING (EMBL)EMC6
ZODIACEMC6
Ontologies - Pathways
QuickGOQ9BV81
Ontology : AmiGOautophagosome assembly  protein binding  integral component of membrane  integral component of endoplasmic reticulum membrane  protein folding in endoplasmic reticulum  ER membrane protein complex  integral component of omegasome membrane  
Ontology : EGO-EBIautophagosome assembly  protein binding  integral component of membrane  integral component of endoplasmic reticulum membrane  protein folding in endoplasmic reticulum  ER membrane protein complex  integral component of omegasome membrane  
NDEx NetworkEMC6
Atlas of Cancer Signalling NetworkEMC6
Wikipedia pathwaysEMC6
Orthology - Evolution
OrthoDB83460
GeneTree (enSembl)ENSG00000127774
Phylogenetic Trees/Animal Genes : TreeFamEMC6
HOVERGENQ9BV81
HOGENOMQ9BV81
Homologs : HomoloGeneEMC6
Homology/Alignments : Family Browser (UCSC)EMC6
Gene fusions - Rearrangements
Fusion: Tumor Portal EMC6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC6
dbVarEMC6
ClinVarEMC6
1000_GenomesEMC6 
Exome Variant ServerEMC6
ExAC (Exome Aggregation Consortium)ENSG00000127774
GNOMAD BrowserENSG00000127774
Genetic variants : HAPMAP83460
Genomic Variants (DGV)EMC6 [DGVbeta]
DECIPHEREMC6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC6 
Mutations
ICGC Data PortalEMC6 
TCGA Data PortalEMC6 
Broad Tumor PortalEMC6
OASIS PortalEMC6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEMC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EMC6
DgiDB (Drug Gene Interaction Database)EMC6
DoCM (Curated mutations)EMC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC6 (select a term)
intoGenEMC6
Cancer3DEMC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEMC6
Genetic Testing Registry EMC6
NextProtQ9BV81 [Medical]
TSGene83460
GENETestsEMC6
Target ValidationEMC6
Huge Navigator EMC6 [HugePedia]
snp3D : Map Gene to Disease83460
BioCentury BCIQEMC6
ClinGenEMC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83460
Chemical/Pharm GKB GenePA142670745
Clinical trialEMC6
Miscellaneous
canSAR (ICR)EMC6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC6
EVEXEMC6
GoPubMedEMC6
iHOPEMC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:45:44 CET 2017

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