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EMC7 (ER membrane protein complex subunit 7)

Identity

Alias_namesC15orf24
chromosome 15 open reading frame 24
Alias_symbol (synonym)C11orf3
Other aliasHT022
ORF1-FL1
HGNC (Hugo) EMC7
LocusID (NCBI) 56851
Atlas_Id 62815
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34084023 and ends at 34101852 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC7   24301
Cards
Entrez_Gene (NCBI)EMC7  56851  ER membrane protein complex subunit 7
AliasesC11orf3; C15orf24; HT022; ORF1-FL1
GeneCards (Weizmann)EMC7
Ensembl hg19 (Hinxton)ENSG00000134153 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134153 [Gene_View]  chr15:34084023-34101852 [Contig_View]  EMC7 [Vega]
ICGC DataPortalENSG00000134153
TCGA cBioPortalEMC7
AceView (NCBI)EMC7
Genatlas (Paris)EMC7
WikiGenes56851
SOURCE (Princeton)EMC7
Genetics Home Reference (NIH)EMC7
Genomic and cartography
GoldenPath hg38 (UCSC)EMC7  -     chr15:34084023-34101852 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC7  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblEMC7 - 15q14 [CytoView hg19]  EMC7 - 15q14 [CytoView hg38]
Mapping of homologs : NCBIEMC7 [Mapview hg19]  EMC7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF242729 AJ245874 AJ250344 AK314883 AY358445
RefSeq transcript (Entrez)NM_020154
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC7
Cluster EST : UnigeneHs.160565 [ NCBI ]
CGAP (NCI)Hs.160565
Alternative Splicing GalleryENSG00000134153
Gene ExpressionEMC7 [ NCBI-GEO ]   EMC7 [ EBI - ARRAY_EXPRESS ]   EMC7 [ SEEK ]   EMC7 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56851
GTEX Portal (Tissue expression)EMC7
Human Protein AtlasENSG00000134153-EMC7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPA0
Splice isoforms : SwissVarQ9NPA0
PhosPhoSitePlusQ9NPA0
Domains : Interpro (EBI)Carb-bd-like_fold    CarboxyPept_regulatory_dom    DUF2012   
Domain families : Pfam (Sanger)DUF2012 (PF09430)   
Domain families : Pfam (NCBI)pfam09430   
Conserved Domain (NCBI)EMC7
DMDM Disease mutations56851
Blocks (Seattle)EMC7
PDB (SRS)1B0G    1LP9    2J8U    2JCC    2UWE   
PDB (PDBSum)1B0G    1LP9    2J8U    2JCC    2UWE   
PDB (IMB)1B0G    1LP9    2J8U    2JCC    2UWE   
PDB (RSDB)1B0G    1LP9    2J8U    2JCC    2UWE   
Structural Biology KnowledgeBase1B0G    1LP9    2J8U    2JCC    2UWE   
SCOP (Structural Classification of Proteins)1B0G    1LP9    2J8U    2JCC    2UWE   
CATH (Classification of proteins structures)1B0G    1LP9    2J8U    2JCC    2UWE   
SuperfamilyQ9NPA0
Human Protein Atlas [tissue]ENSG00000134153-EMC7 [tissue]
Peptide AtlasQ9NPA0
HPRD12670
IPIIPI00024551   IPI01013288   IPI00977751   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPA0
IntAct (EBI)Q9NPA0
FunCoupENSG00000134153
BioGRIDEMC7
STRING (EMBL)EMC7
ZODIACEMC7
Ontologies - Pathways
QuickGOQ9NPA0
Ontology : AmiGObiological_process  integral component of membrane  integral component of membrane  carbohydrate binding  ER membrane protein complex  
Ontology : EGO-EBIbiological_process  integral component of membrane  integral component of membrane  carbohydrate binding  ER membrane protein complex  
NDEx NetworkEMC7
Atlas of Cancer Signalling NetworkEMC7
Wikipedia pathwaysEMC7
Orthology - Evolution
OrthoDB56851
GeneTree (enSembl)ENSG00000134153
Phylogenetic Trees/Animal Genes : TreeFamEMC7
HOVERGENQ9NPA0
HOGENOMQ9NPA0
Homologs : HomoloGeneEMC7
Homology/Alignments : Family Browser (UCSC)EMC7
Gene fusions - Rearrangements
Fusion: Tumor Portal EMC7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC7
dbVarEMC7
ClinVarEMC7
1000_GenomesEMC7 
Exome Variant ServerEMC7
ExAC (Exome Aggregation Consortium)ENSG00000134153
GNOMAD BrowserENSG00000134153
Genetic variants : HAPMAP56851
Genomic Variants (DGV)EMC7 [DGVbeta]
DECIPHEREMC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC7 
Mutations
ICGC Data PortalEMC7 
TCGA Data PortalEMC7 
Broad Tumor PortalEMC7
OASIS PortalEMC7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEMC7
BioMutasearch EMC7
DgiDB (Drug Gene Interaction Database)EMC7
DoCM (Curated mutations)EMC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC7 (select a term)
intoGenEMC7
Cancer3DEMC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEMC7
Genetic Testing Registry EMC7
NextProtQ9NPA0 [Medical]
TSGene56851
GENETestsEMC7
Target ValidationEMC7
Huge Navigator EMC7 [HugePedia]
snp3D : Map Gene to Disease56851
BioCentury BCIQEMC7
ClinGenEMC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56851
Chemical/Pharm GKB GenePA134900493
Clinical trialEMC7
Miscellaneous
canSAR (ICR)EMC7 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC7
EVEXEMC7
GoPubMedEMC7
iHOPEMC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:45:44 CET 2017

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