Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EMC8 (ER membrane protein complex subunit 8)

Identity

Alias_namesC16orf4
NOC4
C16orf2
COX4NB
chromosome 16 open reading frame 4
neighbor of COX4
chromosome 16 open reading frame 2
COX4 neighbor
Alias_symbol (synonym)FAM158B
Other alias
HGNC (Hugo) EMC8
LocusID (NCBI) 10328
Atlas_Id 62816
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 85778625 and ends at 85799542 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC8   7864
Cards
Entrez_Gene (NCBI)EMC8  10328  ER membrane protein complex subunit 8
AliasesC16orf2; C16orf4; COX4NB; FAM158B; 
NOC4
GeneCards (Weizmann)EMC8
Ensembl hg19 (Hinxton)ENSG00000131148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131148 [Gene_View]  chr16:85778625-85799542 [Contig_View]  EMC8 [Vega]
ICGC DataPortalENSG00000131148
TCGA cBioPortalEMC8
AceView (NCBI)EMC8
Genatlas (Paris)EMC8
WikiGenes10328
SOURCE (Princeton)EMC8
Genetics Home Reference (NIH)EMC8
Genomic and cartography
GoldenPath hg38 (UCSC)EMC8  -     chr16:85778625-85799542 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC8  -     16q24.1   [Description]    (hg19-Feb_2009)
EnsemblEMC8 - 16q24.1 [CytoView hg19]  EMC8 - 16q24.1 [CytoView hg38]
Mapping of homologs : NCBIEMC8 [Mapview hg19]  EMC8 [Mapview hg38]
OMIM604886   
Gene and transcription
Genbank (Entrez)AF005888 AK313977 BC001472 BC005886 BC007445
RefSeq transcript (Entrez)NM_001142288 NM_006067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC8
Cluster EST : UnigeneHs.173162 [ NCBI ]
CGAP (NCI)Hs.173162
Alternative Splicing GalleryENSG00000131148
Gene ExpressionEMC8 [ NCBI-GEO ]   EMC8 [ EBI - ARRAY_EXPRESS ]   EMC8 [ SEEK ]   EMC8 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10328
GTEX Portal (Tissue expression)EMC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43402   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43402  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43402
Splice isoforms : SwissVarO43402
PhosPhoSitePlusO43402
Domains : Interpro (EBI)EMC8/9   
Domain families : Pfam (Sanger)UPF0172 (PF03665)   
Domain families : Pfam (NCBI)pfam03665   
Conserved Domain (NCBI)EMC8
DMDM Disease mutations10328
Blocks (Seattle)EMC8
SuperfamilyO43402
Human Protein AtlasENSG00000131148
Peptide AtlasO43402
HPRD05350
IPIIPI00005740   IPI00915313   
Protein Interaction databases
DIP (DOE-UCLA)O43402
IntAct (EBI)O43402
FunCoupENSG00000131148
BioGRIDEMC8
STRING (EMBL)EMC8
ZODIACEMC8
Ontologies - Pathways
QuickGOO43402
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  membrane  ER membrane protein complex  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  cytosol  membrane  ER membrane protein complex  
NDEx NetworkEMC8
Atlas of Cancer Signalling NetworkEMC8
Wikipedia pathwaysEMC8
Orthology - Evolution
OrthoDB10328
GeneTree (enSembl)ENSG00000131148
Phylogenetic Trees/Animal Genes : TreeFamEMC8
HOVERGENO43402
HOGENOMO43402
Homologs : HomoloGeneEMC8
Homology/Alignments : Family Browser (UCSC)EMC8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC8
dbVarEMC8
ClinVarEMC8
1000_GenomesEMC8 
Exome Variant ServerEMC8
ExAC (Exome Aggregation Consortium)EMC8 (select the gene name)
Genetic variants : HAPMAP10328
Genomic Variants (DGV)EMC8 [DGVbeta]
DECIPHEREMC8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC8 
Mutations
ICGC Data PortalEMC8 
TCGA Data PortalEMC8 
Broad Tumor PortalEMC8
OASIS PortalEMC8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEMC8
BioMutasearch EMC8
DgiDB (Drug Gene Interaction Database)EMC8
DoCM (Curated mutations)EMC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC8 (select a term)
intoGenEMC8
Cancer3DEMC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604886   
Orphanet
MedgenEMC8
Genetic Testing Registry EMC8
NextProtO43402 [Medical]
TSGene10328
GENETestsEMC8
Target ValidationEMC8
Huge Navigator EMC8 [HugePedia]
snp3D : Map Gene to Disease10328
BioCentury BCIQEMC8
ClinGenEMC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10328
Chemical/Pharm GKB GenePA31668
Clinical trialEMC8
Miscellaneous
canSAR (ICR)EMC8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC8
EVEXEMC8
GoPubMedEMC8
iHOPEMC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:04 CEST 2017

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