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EMC9 (ER membrane protein complex subunit 9)

Identity

Alias_namesC14orf122
FAM158A
chromosome 14 open reading frame 122
family with sequence similarity 158, member A
Alias_symbol (synonym)CGI-112
Other alias
HGNC (Hugo) EMC9
LocusID (NCBI) 51016
Atlas_Id 62817
Location 14q12  [Link to chromosome band 14q12]
Location_base_pair Starts at 24138965 and ends at 24141588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ITGA3 (17q21.33) / EMC9 (14q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMC9   20273
Cards
Entrez_Gene (NCBI)EMC9  51016  ER membrane protein complex subunit 9
AliasesC14orf122; CGI-112; FAM158A
GeneCards (Weizmann)EMC9
Ensembl hg19 (Hinxton)ENSG00000100908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100908 [Gene_View]  chr14:24138965-24141588 [Contig_View]  EMC9 [Vega]
ICGC DataPortalENSG00000100908
TCGA cBioPortalEMC9
AceView (NCBI)EMC9
Genatlas (Paris)EMC9
WikiGenes51016
SOURCE (Princeton)EMC9
Genetics Home Reference (NIH)EMC9
Genomic and cartography
GoldenPath hg38 (UCSC)EMC9  -     chr14:24138965-24141588 -  14q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMC9  -     14q12   [Description]    (hg19-Feb_2009)
EnsemblEMC9 - 14q12 [CytoView hg19]  EMC9 - 14q12 [CytoView hg38]
Mapping of homologs : NCBIEMC9 [Mapview hg19]  EMC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151870 AY368908 BC002491
RefSeq transcript (Entrez)NM_001346874 NM_001346875 NM_001346876 NM_001346877 NM_016049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMC9
Cluster EST : UnigeneHs.271614 [ NCBI ]
CGAP (NCI)Hs.271614
Alternative Splicing GalleryENSG00000100908
Gene ExpressionEMC9 [ NCBI-GEO ]   EMC9 [ EBI - ARRAY_EXPRESS ]   EMC9 [ SEEK ]   EMC9 [ MEM ]
Gene Expression Viewer (FireBrowse)EMC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51016
GTEX Portal (Tissue expression)EMC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3B6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3B6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3B6
Splice isoforms : SwissVarQ9Y3B6
PhosPhoSitePlusQ9Y3B6
Domains : Interpro (EBI)EMC8/9   
Domain families : Pfam (Sanger)UPF0172 (PF03665)   
Domain families : Pfam (NCBI)pfam03665   
Conserved Domain (NCBI)EMC9
DMDM Disease mutations51016
Blocks (Seattle)EMC9
SuperfamilyQ9Y3B6
Human Protein AtlasENSG00000100908
Peptide AtlasQ9Y3B6
HPRD16596
IPIIPI00294481   IPI00790370   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3B6
IntAct (EBI)Q9Y3B6
FunCoupENSG00000100908
BioGRIDEMC9
STRING (EMBL)EMC9
ZODIACEMC9
Ontologies - Pathways
QuickGOQ9Y3B6
Ontology : AmiGOprotein binding  cytoplasm  ER membrane protein complex  
Ontology : EGO-EBIprotein binding  cytoplasm  ER membrane protein complex  
NDEx NetworkEMC9
Atlas of Cancer Signalling NetworkEMC9
Wikipedia pathwaysEMC9
Orthology - Evolution
OrthoDB51016
GeneTree (enSembl)ENSG00000100908
Phylogenetic Trees/Animal Genes : TreeFamEMC9
HOVERGENQ9Y3B6
HOGENOMQ9Y3B6
Homologs : HomoloGeneEMC9
Homology/Alignments : Family Browser (UCSC)EMC9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMC9
dbVarEMC9
ClinVarEMC9
1000_GenomesEMC9 
Exome Variant ServerEMC9
ExAC (Exome Aggregation Consortium)EMC9 (select the gene name)
Genetic variants : HAPMAP51016
Genomic Variants (DGV)EMC9 [DGVbeta]
DECIPHEREMC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMC9 
Mutations
ICGC Data PortalEMC9 
TCGA Data PortalEMC9 
Broad Tumor PortalEMC9
OASIS PortalEMC9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEMC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EMC9
DgiDB (Drug Gene Interaction Database)EMC9
DoCM (Curated mutations)EMC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMC9 (select a term)
intoGenEMC9
Cancer3DEMC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEMC9
Genetic Testing Registry EMC9
NextProtQ9Y3B6 [Medical]
TSGene51016
GENETestsEMC9
Target ValidationEMC9
Huge Navigator EMC9 [HugePedia]
snp3D : Map Gene to Disease51016
BioCentury BCIQEMC9
ClinGenEMC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51016
Chemical/Pharm GKB GenePA162386700
Clinical trialEMC9
Miscellaneous
canSAR (ICR)EMC9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMC9
EVEXEMC9
GoPubMedEMC9
iHOPEMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:07:04 CEST 2017

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