Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EMCN (endomucin)

Identity

Alias_symbol (synonym)MUC14
Other aliasEMCN2
HGNC (Hugo) EMCN
LocusID (NCBI) 51705
Atlas_Id 40447
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 100395341 and ends at 100518093 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EMCN   16041
Cards
Entrez_Gene (NCBI)EMCN  51705  endomucin
AliasesEMCN2; MUC14
GeneCards (Weizmann)EMCN
Ensembl hg19 (Hinxton)ENSG00000164035 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164035 [Gene_View]  chr4:100395341-100518093 [Contig_View]  EMCN [Vega]
ICGC DataPortalENSG00000164035
TCGA cBioPortalEMCN
AceView (NCBI)EMCN
Genatlas (Paris)EMCN
WikiGenes51705
SOURCE (Princeton)EMCN
Genetics Home Reference (NIH)EMCN
Genomic and cartography
GoldenPath hg38 (UCSC)EMCN  -     chr4:100395341-100518093 -  4q24   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMCN  -     4q24   [Description]    (hg19-Feb_2009)
EnsemblEMCN - 4q24 [CytoView hg19]  EMCN - 4q24 [CytoView hg38]
Mapping of homologs : NCBIEMCN [Mapview hg19]  EMCN [Mapview hg38]
OMIM608350   
Gene and transcription
Genbank (Entrez)AB034695 AF205940 AK026875 AK222741 AK291831
RefSeq transcript (Entrez)NM_001159694 NM_016242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMCN
Cluster EST : UnigeneHs.152913 [ NCBI ]
CGAP (NCI)Hs.152913
Alternative Splicing GalleryENSG00000164035
Gene ExpressionEMCN [ NCBI-GEO ]   EMCN [ EBI - ARRAY_EXPRESS ]   EMCN [ SEEK ]   EMCN [ MEM ]
Gene Expression Viewer (FireBrowse)EMCN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51705
GTEX Portal (Tissue expression)EMCN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULC0
Splice isoforms : SwissVarQ9ULC0
PhosPhoSitePlusQ9ULC0
Domains : Interpro (EBI)Endomucin   
Domain families : Pfam (Sanger)Endomucin (PF07010)   
Domain families : Pfam (NCBI)pfam07010   
Conserved Domain (NCBI)EMCN
DMDM Disease mutations51705
Blocks (Seattle)EMCN
SuperfamilyQ9ULC0
Human Protein AtlasENSG00000164035
Peptide AtlasQ9ULC0
HPRD12220
IPIIPI00452565   IPI00452566   IPI00930643   IPI00966030   IPI00965771   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULC0
IntAct (EBI)Q9ULC0
FunCoupENSG00000164035
BioGRIDEMCN
STRING (EMBL)EMCN
ZODIACEMCN
Ontologies - Pathways
QuickGOQ9ULC0
Ontology : AmiGOextracellular region  plasma membrane  integral component of membrane  
Ontology : EGO-EBIextracellular region  plasma membrane  integral component of membrane  
NDEx NetworkEMCN
Atlas of Cancer Signalling NetworkEMCN
Wikipedia pathwaysEMCN
Orthology - Evolution
OrthoDB51705
GeneTree (enSembl)ENSG00000164035
Phylogenetic Trees/Animal Genes : TreeFamEMCN
HOVERGENQ9ULC0
HOGENOMQ9ULC0
Homologs : HomoloGeneEMCN
Homology/Alignments : Family Browser (UCSC)EMCN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEMCN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMCN
dbVarEMCN
ClinVarEMCN
1000_GenomesEMCN 
Exome Variant ServerEMCN
ExAC (Exome Aggregation Consortium)EMCN (select the gene name)
Genetic variants : HAPMAP51705
Genomic Variants (DGV)EMCN [DGVbeta]
DECIPHEREMCN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEMCN 
Mutations
ICGC Data PortalEMCN 
TCGA Data PortalEMCN 
Broad Tumor PortalEMCN
OASIS PortalEMCN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEMCN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEMCN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EMCN
DgiDB (Drug Gene Interaction Database)EMCN
DoCM (Curated mutations)EMCN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EMCN (select a term)
intoGenEMCN
Cancer3DEMCN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608350   
Orphanet
MedgenEMCN
Genetic Testing Registry EMCN
NextProtQ9ULC0 [Medical]
TSGene51705
GENETestsEMCN
Target ValidationEMCN
Huge Navigator EMCN [HugePedia]
snp3D : Map Gene to Disease51705
BioCentury BCIQEMCN
ClinGenEMCN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51705
Chemical/Pharm GKB GenePA144596436
Clinical trialEMCN
Miscellaneous
canSAR (ICR)EMCN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMCN
EVEXEMCN
GoPubMedEMCN
iHOPEMCN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:32:32 CEST 2017

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