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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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EML1 (echinoderm microtubule associated protein like 1)

Identity

Other namesELP79
EMAP
EMAPL
HuEMAP
HGNC (Hugo) EML1
LocusID (NCBI) 2009
Location 14q32.2
Location_base_pair Starts at 100259745 and ends at 100408395 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias 11q23ChildAMLID1615 11q23ID1030

External links

Nomenclature
HGNC (Hugo)EML1   3330
Cards
Entrez_Gene (NCBI)EML1  2009  echinoderm microtubule associated protein like 1
GeneCards (Weizmann)EML1
Ensembl hg19 (Hinxton)ENSG00000066629 [Gene_View]  chr14:100259745-100408395 [Contig_View]  EML1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000066629 [Gene_View]  chr14:100259745-100408395 [Contig_View]  EML1 [Vega]
ICGC DataPortalENSG00000066629
cBioPortalEML1
AceView (NCBI)EML1
Genatlas (Paris)EML1
WikiGenes2009
SOURCE (Princeton)EML1
Genomic and cartography
GoldenPath hg19 (UCSC)EML1  -     chr14:100259745-100408395 +  14q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EML1  -     14q32.2   [Description]    (hg38-Dec_2013)
EnsemblEML1 - 14q32.2 [CytoView hg19]  EML1 - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBIEML1 [Mapview hg19]  EML1 [Mapview hg38]
OMIM602033   
Gene and transcription
Genbank (Entrez)AF035276 AK023861 AK126980 AK299812 AK307925
RefSeq transcript (Entrez)NM_001008707 NM_004434
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)EML1
Cluster EST : UnigeneHs.12451 [ NCBI ]
CGAP (NCI)Hs.12451
Alternative Splicing : Fast-db (Paris)GSHG0009110
Alternative Splicing GalleryENSG00000066629
Gene ExpressionEML1 [ NCBI-GEO ]     EML1 [ SEEK ]   EML1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00423 (Uniprot)
NextProtO00423  [Medical]
With graphics : InterProO00423
Splice isoforms : SwissVarO00423 (Swissvar)
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)HELP    Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Related proteins : CluSTrO00423
Domain families : Pfam (Sanger)HELP (PF03451)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam03451    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM Disease mutations2009
Blocks (Seattle)O00423
PDB (SRS)4CI8   
PDB (PDBSum)4CI8   
PDB (IMB)4CI8   
PDB (RSDB)4CI8   
Human Protein AtlasENSG00000066629
Peptide AtlasO00423
HPRD03613
IPIIPI00334011   IPI00550611   IPI01009898   IPI01024810   IPI01024698   IPI01024859   IPI01026361   IPI01026334   IPI01025998   IPI01026116   IPI01025767   IPI01025860   IPI01025502   IPI01025631   IPI01025232   
Protein Interaction databases
DIP (DOE-UCLA)O00423
IntAct (EBI)O00423
FunCoupENSG00000066629
BioGRIDEML1
IntegromeDBEML1
STRING (EMBL)EML1
Ontologies - Pathways
QuickGOO00423
Ontology : AmiGOmicrotubule cytoskeleton organization  hematopoietic progenitor cell differentiation  calcium ion binding  protein binding  cytosol  microtubule  microtubule associated complex  mitotic spindle organization  neuroblast proliferation  brain development  brain development  microtubule binding  tubulin binding  perinuclear region of cytoplasm  mitotic spindle pole  mitotic spindle midzone  
Ontology : EGO-EBImicrotubule cytoskeleton organization  hematopoietic progenitor cell differentiation  calcium ion binding  protein binding  cytosol  microtubule  microtubule associated complex  mitotic spindle organization  neuroblast proliferation  brain development  brain development  microtubule binding  tubulin binding  perinuclear region of cytoplasm  mitotic spindle pole  mitotic spindle midzone  
Protein Interaction DatabaseEML1
DoCM (Curated mutations)EML1
Wikipedia pathwaysEML1
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerEML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EML1
dbVarEML1
ClinVarEML1
1000_GenomesEML1 
Exome Variant ServerEML1
SNP (GeneSNP Utah)EML1
SNP : HGBaseEML1
Genetic variants : HAPMAPEML1
Genomic Variants (DGV)EML1 [DGVbeta]
Mutations
ICGC Data PortalENSG00000066629 
Somatic Mutations in Cancer : COSMICEML1 
CONAN: Copy Number AnalysisEML1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)14:100259745-100408395
Mutations and Diseases : HGMDEML1
OMIM602033   
MedgenEML1
NextProtO00423 [Medical]
GENETestsEML1
Disease Genetic AssociationEML1
Huge Navigator EML1 [HugePedia]  EML1 [HugeCancerGEM]
snp3D : Map Gene to Disease2009
DGIdb (Drug Gene Interaction db)EML1
General knowledge
Homologs : HomoloGeneEML1
Homology/Alignments : Family Browser (UCSC)EML1
Phylogenetic Trees/Animal Genes : TreeFamEML1
Chemical/Protein Interactions : CTD2009
Chemical/Pharm GKB GenePA27767
Clinical trialEML1
Cancer Resource (Charite)ENSG00000066629
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineEML1
GoPubMedEML1
iHOPEML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:17:41 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.