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EML1 (echinoderm microtubule associated protein like 1)

Identity

Other namesELP79
EMAP
EMAPL
HuEMAP
HGNC (Hugo) EML1
LocusID (NCBI) 2009
Location 14q32.2
Location_base_pair Starts at 100259745 and ends at 100408395 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EML1   3330
Entrez_Gene (NCBI)EML1  2009  echinoderm microtubule associated protein like 1
Cards
GeneCards (Weizmann)EML1
Ensembl (Hinxton)ENSG00000066629 [Gene_View]  chr14:100259745-100408395 [Contig_View]  EML1 [Vega]
AceView (NCBI)EML1
Genatlas (Paris)EML1
SOURCE (Stanford)NM_001008707 NM_004434
Genomic and cartography
GoldenPath (UCSC)EML1  -  14q32.2   chr14:100259745-100408395 +  14q32.2   [Description]    (hg19-Feb_2009)
EnsemblEML1 - 14q32.2 [CytoView]
Mapping of homologs : NCBIEML1 [Mapview]
OMIM602033   
Gene and transcription
Genbank (Entrez)AF035276 AK023861 AK126980 AK299812 AK307925
RefSeq transcript (SRS)NM_001008707 NM_004434
RefSeq transcript (Entrez)NM_001008707 NM_004434
RefSeq genomic (SRS)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838115 NW_004078079
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838115 NW_004078079
Consensus coding sequences : CCDS (NCBI)EML1
Cluster EST : UnigeneHs.12451 [ SRS ] Hs.12451 [ NCBI ]
CGAP (NCI)Hs.12451
Alternative Splicing : Fast-db (Paris)GSHG0009110
Alternative Splicing GalleryENSG00000066629
Gene ExpressionEML1 [ NCBI-GEO ]   EML1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00423 (SRS) O00423 (Uniprot)
NextProtO00423
With graphics : InterProO00423
Splice isoforms : SwissVarO00423(Swissvar)
Domaine pattern : Prosite (SRS)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (SRS)HELP    Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domains : Interpro (EBI)HELP    Quinonprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Related proteins : CluSTrO00423
Domain families : Pfam (SRS)HELP (PF03451)    WD40 (PF00400)   
Domain families : Pfam (Sanger)HELP (PF03451)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam03451    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM2009
Blocks (Seattle)O00423
Human Protein AtlasENSG00000066629
HPRD03613
IPIIPI00334011   IPI00550611   IPI01009898   IPI01024810   IPI01024698   IPI01024859   IPI01026361   IPI01026334   IPI01025998   IPI01026116   IPI01025767   IPI01025860   IPI01025502   IPI01025631   IPI01025232   
Protein Interaction databases
DIP (DOE-UCLA)O00423
IntAct (EBI)O00423
FunCoupENSG00000066629
REACTOMEEML1
Protein Interaction Database2009
BioGRIDEML1
InParanoidO00423
Interologous Interaction database O00423
IntegromeDBEML1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EML1
SNP (GeneSNP Utah)EML1
SNP : HGBaseEML1
Genetic variants : HAPMAPEML1
Somatic Mutations in Cancer : COSMICEML1 
CONAN: Copy Number AnalysisEML1 
Translocation Breakpoints in Cancer : TICdbEML1 
Mutations and Diseases : HGMDEML1
OMIM602033   
GENETests602033   
Disease Genetic AssociationEML1
Huge Navigator EML1 [HugePedia]  EML1 [HugeCancerGEM]
Genomic VariantsEML1  EML1 [DGVbeta]
ClinVarEML1
snp3D : Map Gene to Disease2009
General knowledge
Homologs : HomoloGeneEML1
Homology/Alignments : Family Browser (UCSC)EML1
Phylogenetic Trees/Animal Genes : TreeFamEML1
Chemical/Protein Interactions : CTD2009
Chemical/Pharm GKB GenePA27767
Clinical trialEML1
Cancer Resource (Charite)ENSG00000066629
Ontology : AmiGOcalcium ion binding  protein binding  cytoplasm  microtubule  microtubule associated complex  
Ontology : EGO-EBIcalcium ion binding  protein binding  cytoplasm  microtubule  microtubule associated complex  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneEML1
iHOPEML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:30:32 CEST 2013
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