Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EML3 (echinoderm microtubule associated protein like 3)

Identity

Alias_symbol (synonym)FLJ35827
ELP95
Other alias
HGNC (Hugo) EML3
LocusID (NCBI) 256364
Atlas_Id 62822
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62602219 and ends at 62612765 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EML3 (11q12.3) / DGKA (12q13.2)EML3 (11q12.3) / EML3 (11q12.3)EML3 (11q12.3) / HNRNPH3 (10q21.3)
EML3 (11q12.3) / SFTPB (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EML3   26666
Cards
Entrez_Gene (NCBI)EML3  256364  echinoderm microtubule associated protein like 3
AliasesELP95
GeneCards (Weizmann)EML3
Ensembl hg19 (Hinxton)ENSG00000149499 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149499 [Gene_View]  chr11:62602219-62612765 [Contig_View]  EML3 [Vega]
ICGC DataPortalENSG00000149499
TCGA cBioPortalEML3
AceView (NCBI)EML3
Genatlas (Paris)EML3
WikiGenes256364
SOURCE (Princeton)EML3
Genetics Home Reference (NIH)EML3
Genomic and cartography
GoldenPath hg38 (UCSC)EML3  -     chr11:62602219-62612765 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EML3  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblEML3 - 11q12.3 [CytoView hg19]  EML3 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBIEML3 [Mapview hg19]  EML3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093146 AK128679 AK296901 AK310579 AL833388
RefSeq transcript (Entrez)NM_001300793 NM_001300794 NM_153265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EML3
Cluster EST : UnigeneHs.379785 [ NCBI ]
CGAP (NCI)Hs.379785
Alternative Splicing GalleryENSG00000149499
Gene ExpressionEML3 [ NCBI-GEO ]   EML3 [ EBI - ARRAY_EXPRESS ]   EML3 [ SEEK ]   EML3 [ MEM ]
Gene Expression Viewer (FireBrowse)EML3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256364
GTEX Portal (Tissue expression)EML3
Human Protein AtlasENSG00000149499-EML3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32P44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32P44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32P44
Splice isoforms : SwissVarQ32P44
PhosPhoSitePlusQ32P44
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)HELP    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domain families : Pfam (Sanger)HELP (PF03451)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam03451    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)EML3
DMDM Disease mutations256364
Blocks (Seattle)EML3
SuperfamilyQ32P44
Human Protein Atlas [tissue]ENSG00000149499-EML3 [tissue]
Peptide AtlasQ32P44
HPRD08193
IPIIPI00167909   IPI00843958   IPI00843902   IPI00910363   IPI00852659   IPI00852574   IPI00852738   IPI00953534   IPI01015362   IPI01012699   IPI00981270   
Protein Interaction databases
DIP (DOE-UCLA)Q32P44
IntAct (EBI)Q32P44
FunCoupENSG00000149499
BioGRIDEML3
STRING (EMBL)EML3
ZODIACEML3
Ontologies - Pathways
QuickGOQ32P44
Ontology : AmiGOcytoplasm  microtubule  microtubule binding  microtubule cytoskeleton  
Ontology : EGO-EBIcytoplasm  microtubule  microtubule binding  microtubule cytoskeleton  
NDEx NetworkEML3
Atlas of Cancer Signalling NetworkEML3
Wikipedia pathwaysEML3
Orthology - Evolution
OrthoDB256364
GeneTree (enSembl)ENSG00000149499
Phylogenetic Trees/Animal Genes : TreeFamEML3
HOVERGENQ32P44
HOGENOMQ32P44
Homologs : HomoloGeneEML3
Homology/Alignments : Family Browser (UCSC)EML3
Gene fusions - Rearrangements
Fusion: Tumor Portal EML3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEML3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EML3
dbVarEML3
ClinVarEML3
1000_GenomesEML3 
Exome Variant ServerEML3
ExAC (Exome Aggregation Consortium)ENSG00000149499
GNOMAD BrowserENSG00000149499
Genetic variants : HAPMAP256364
Genomic Variants (DGV)EML3 [DGVbeta]
DECIPHEREML3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEML3 
Mutations
ICGC Data PortalEML3 
TCGA Data PortalEML3 
Broad Tumor PortalEML3
OASIS PortalEML3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEML3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEML3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EML3
DgiDB (Drug Gene Interaction Database)EML3
DoCM (Curated mutations)EML3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EML3 (select a term)
intoGenEML3
Cancer3DEML3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEML3
Genetic Testing Registry EML3
NextProtQ32P44 [Medical]
TSGene256364
GENETestsEML3
Target ValidationEML3
Huge Navigator EML3 [HugePedia]
snp3D : Map Gene to Disease256364
BioCentury BCIQEML3
ClinGenEML3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256364
Chemical/Pharm GKB GenePA142671910
Clinical trialEML3
Miscellaneous
canSAR (ICR)EML3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEML3
EVEXEML3
GoPubMedEML3
iHOPEML3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:45:45 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.