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EML5 (echinoderm microtubule associated protein like 5)

Identity

Alias_symbol (synonym)HuEMAP-2
EMAP-2
Other alias
HGNC (Hugo) EML5
LocusID (NCBI) 161436
Atlas_Id 62823
Location 14q31.3  [Link to chromosome band 14q31]
Location_base_pair Starts at 88614830 and ends at 88792752 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CDON (11q24.2) / EML5 (14q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EML5   18197
Cards
Entrez_Gene (NCBI)EML5  161436  echinoderm microtubule associated protein like 5
AliasesEMAP-2
GeneCards (Weizmann)EML5
Ensembl hg19 (Hinxton)ENSG00000165521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165521 [Gene_View]  chr14:88614830-88792752 [Contig_View]  EML5 [Vega]
ICGC DataPortalENSG00000165521
TCGA cBioPortalEML5
AceView (NCBI)EML5
Genatlas (Paris)EML5
WikiGenes161436
SOURCE (Princeton)EML5
Genetics Home Reference (NIH)EML5
Genomic and cartography
GoldenPath hg38 (UCSC)EML5  -     chr14:88614830-88792752 -  14q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EML5  -     14q31.3   [Description]    (hg19-Feb_2009)
EnsemblEML5 - 14q31.3 [CytoView hg19]  EML5 - 14q31.3 [CytoView hg38]
Mapping of homologs : NCBIEML5 [Mapview hg19]  EML5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122824 AK127024 AK128086 AY357725 BC032685
RefSeq transcript (Entrez)NM_183387
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EML5
Cluster EST : UnigeneHs.325846 [ NCBI ]
CGAP (NCI)Hs.325846
Alternative Splicing GalleryENSG00000165521
Gene ExpressionEML5 [ NCBI-GEO ]   EML5 [ EBI - ARRAY_EXPRESS ]   EML5 [ SEEK ]   EML5 [ MEM ]
Gene Expression Viewer (FireBrowse)EML5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161436
GTEX Portal (Tissue expression)EML5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05BV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05BV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05BV3
Splice isoforms : SwissVarQ05BV3
PhosPhoSitePlusQ05BV3
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)Apc4_WD40_dom    HELP    Quinoprot_gluc/sorb_DH    Quinoprotein_ADH-like_supfam    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domain families : Pfam (Sanger)ANAPC4_WD40 (PF12894)    HELP (PF03451)    WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam12894    pfam03451    pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
Conserved Domain (NCBI)EML5
DMDM Disease mutations161436
Blocks (Seattle)EML5
SuperfamilyQ05BV3
Human Protein AtlasENSG00000165521
Peptide AtlasQ05BV3
HPRD16861
IPIIPI00923627   IPI00843972   IPI00982557   IPI00742831   IPI01025435   IPI01025547   
Protein Interaction databases
DIP (DOE-UCLA)Q05BV3
IntAct (EBI)Q05BV3
FunCoupENSG00000165521
BioGRIDEML5
STRING (EMBL)EML5
ZODIACEML5
Ontologies - Pathways
QuickGOQ05BV3
Ontology : AmiGOmolecular_function  catalytic activity  cytoplasm  microtubule  microtubule binding  biological_process  microtubule cytoskeleton  extracellular exosome  
Ontology : EGO-EBImolecular_function  catalytic activity  cytoplasm  microtubule  microtubule binding  biological_process  microtubule cytoskeleton  extracellular exosome  
NDEx NetworkEML5
Atlas of Cancer Signalling NetworkEML5
Wikipedia pathwaysEML5
Orthology - Evolution
OrthoDB161436
GeneTree (enSembl)ENSG00000165521
Phylogenetic Trees/Animal Genes : TreeFamEML5
HOVERGENQ05BV3
HOGENOMQ05BV3
Homologs : HomoloGeneEML5
Homology/Alignments : Family Browser (UCSC)EML5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEML5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EML5
dbVarEML5
ClinVarEML5
1000_GenomesEML5 
Exome Variant ServerEML5
ExAC (Exome Aggregation Consortium)EML5 (select the gene name)
Genetic variants : HAPMAP161436
Genomic Variants (DGV)EML5 [DGVbeta]
DECIPHEREML5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEML5 
Mutations
ICGC Data PortalEML5 
TCGA Data PortalEML5 
Broad Tumor PortalEML5
OASIS PortalEML5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEML5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEML5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EML5
DgiDB (Drug Gene Interaction Database)EML5
DoCM (Curated mutations)EML5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EML5 (select a term)
intoGenEML5
Cancer3DEML5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEML5
Genetic Testing Registry EML5
NextProtQ05BV3 [Medical]
TSGene161436
GENETestsEML5
Huge Navigator EML5 [HugePedia]
snp3D : Map Gene to Disease161436
BioCentury BCIQEML5
ClinGenEML5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161436
Chemical/Pharm GKB GenePA134894613
Clinical trialEML5
Miscellaneous
canSAR (ICR)EML5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEML5
EVEXEML5
GoPubMedEML5
iHOPEML5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:09:47 CEST 2017

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