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EMP3 (epithelial membrane protein 3)

Identity

Other namesYMP
HGNC (Hugo) EMP3
LocusID (NCBI) 2014
Location 19q13.33
Location_base_pair Starts at 48828629 and ends at 48833810 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EMP3   3335
Cards
Entrez_Gene (NCBI)EMP3  2014  epithelial membrane protein 3
GeneCards (Weizmann)EMP3
Ensembl hg19 (Hinxton)ENSG00000142227 [Gene_View]  chr19:48828629-48833810 [Contig_View]  EMP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000142227 [Gene_View]  chr19:48828629-48833810 [Contig_View]  EMP3 [Vega]
ICGC DataPortalENSG00000142227
cBioPortalEMP3
AceView (NCBI)EMP3
Genatlas (Paris)EMP3
WikiGenes2014
SOURCE (Princeton)EMP3
Genomic and cartography
GoldenPath hg19 (UCSC)EMP3  -     chr19:48828629-48833810 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EMP3  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblEMP3 - 19q13.33 [CytoView hg19]  EMP3 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIEMP3 [Mapview hg19]  EMP3 [Mapview hg38]
OMIM602335   
Gene and transcription
Genbank (Entrez)AL541088 BC009718 BT007124 CR456871 CR541955
RefSeq transcript (Entrez)NM_001425
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838497 NW_004929415
Consensus coding sequences : CCDS (NCBI)EMP3
Cluster EST : UnigeneHs.9999 [ NCBI ]
CGAP (NCI)Hs.9999
Alternative Splicing : Fast-db (Paris)GSHG0015066
Alternative Splicing GalleryENSG00000142227
Gene ExpressionEMP3 [ NCBI-GEO ]     EMP3 [ SEEK ]   EMP3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54852 (Uniprot)
NextProtP54852  [Medical]
With graphics : InterProP54852
Splice isoforms : SwissVarP54852 (Swissvar)
Domaine pattern : Prosite (Expaxy)PMP22_1 (PS01221)    PMP22_2 (PS01222)   
Domains : Interpro (EBI)EMP_3    PMP22/EMP/MP20/Claudin    PMP22_EMP_MP20   
Related proteins : CluSTrP54852
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
DMDM Disease mutations2014
Blocks (Seattle)P54852
Human Protein AtlasENSG00000142227
Peptide AtlasP54852
HPRD18514
IPIIPI00008901   
Protein Interaction databases
DIP (DOE-UCLA)P54852
IntAct (EBI)P54852
FunCoupENSG00000142227
BioGRIDEMP3
IntegromeDBEMP3
STRING (EMBL)EMP3
Ontologies - Pathways
QuickGOP54852
Ontology : AmiGOnegative regulation of cell proliferation  integral component of membrane  cell growth  
Ontology : EGO-EBInegative regulation of cell proliferation  integral component of membrane  cell growth  
Protein Interaction DatabaseEMP3
DoCM (Curated mutations)EMP3
Wikipedia pathwaysEMP3
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerEMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EMP3
dbVarEMP3
ClinVarEMP3
1000_GenomesEMP3 
Exome Variant ServerEMP3
SNP (GeneSNP Utah)EMP3
SNP : HGBaseEMP3
Genetic variants : HAPMAPEMP3
Genomic VariantsEMP3  EMP3 [DGVbeta]
Mutations
ICGC Data PortalENSG00000142227 
Somatic Mutations in Cancer : COSMICEMP3 
CONAN: Copy Number AnalysisEMP3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)19:48828629-48833810
Mutations and Diseases : HGMDEMP3
OMIM602335   
MedgenEMP3
NextProtP54852 [Medical]
GENETestsEMP3
Disease Genetic AssociationEMP3
Huge Navigator EMP3 [HugePedia]  EMP3 [HugeCancerGEM]
snp3D : Map Gene to Disease2014
DGIdb (Drug Gene Interaction db)EMP3
General knowledge
Homologs : HomoloGeneEMP3
Homology/Alignments : Family Browser (UCSC)EMP3
Phylogenetic Trees/Animal Genes : TreeFamEMP3
Chemical/Protein Interactions : CTD2014
Chemical/Pharm GKB GenePA27772
Clinical trialEMP3
Cancer Resource (Charite)ENSG00000142227
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
CoreMineEMP3
GoPubMedEMP3
iHOPEMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 21:22:12 CET 2014

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