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EMP3 (epithelial membrane protein 3)

Identity

Other namesYMP
HGNC (Hugo) EMP3
LocusID (NCBI) 2014
Location 19q13.33
Location_base_pair Starts at 48828629 and ends at 48833810 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EMP3   3335
Cards
Entrez_Gene (NCBI)EMP3  2014  epithelial membrane protein 3
GeneCards (Weizmann)EMP3
Ensembl (Hinxton)ENSG00000142227 [Gene_View]  chr19:48828629-48833810 [Contig_View]  EMP3 [Vega]
ICGC DataPortalENSG00000142227
cBioPortalEMP3
AceView (NCBI)EMP3
Genatlas (Paris)EMP3
WikiGenes2014
SOURCE (Princeton)NM_001425
Genomic and cartography
GoldenPath (UCSC)EMP3  -  19q13.33   chr19:48828629-48833810 +  19q13.33   [Description]    (hg19-Feb_2009)
EnsemblEMP3 - 19q13.33 [CytoView]
Mapping of homologs : NCBIEMP3 [Mapview]
OMIM602335   
Gene and transcription
Genbank (Entrez)AL541088 BC009718 BT007124 CR456871 CR541955
RefSeq transcript (Entrez)NM_001425
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011109 NW_001838497 NW_004929415
Consensus coding sequences : CCDS (NCBI)EMP3
Cluster EST : UnigeneHs.9999 [ NCBI ]
CGAP (NCI)Hs.9999
Alternative Splicing : Fast-db (Paris)GSHG0015066
Alternative Splicing GalleryENSG00000142227
Gene ExpressionEMP3 [ NCBI-GEO ]     EMP3 [ SEEK ]   EMP3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54852 (Uniprot)
NextProtP54852  [Medical]
With graphics : InterProP54852
Splice isoforms : SwissVarP54852 (Swissvar)
Domaine pattern : Prosite (Expaxy)PMP22_1 (PS01221)    PMP22_2 (PS01222)   
Domains : Interpro (EBI)EMP_3 [organisation]   PMP22/EMP/MP20/Claudin [organisation]   PMP22_EMP_MP20 [organisation]  
Related proteins : CluSTrP54852
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
DMDM Disease mutations2014
Blocks (Seattle)P54852
Human Protein AtlasENSG00000142227 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP54852
HPRD18514
IPIIPI00008901   
Protein Interaction databases
DIP (DOE-UCLA)P54852
IntAct (EBI)P54852
FunCoupENSG00000142227
BioGRIDEMP3
InParanoidP54852
Interologous Interaction database P54852
IntegromeDBEMP3
STRING (EMBL)EMP3
Ontologies - Pathways
Ontology : AmiGOnegative regulation of cell proliferation  integral component of membrane  cell growth  
Ontology : EGO-EBInegative regulation of cell proliferation  integral component of membrane  cell growth  
Protein Interaction DatabaseEMP3
Wikipedia pathwaysEMP3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EMP3
snp3D : Map Gene to Disease2014
SNP (GeneSNP Utah)EMP3
SNP : HGBaseEMP3
Genetic variants : HAPMAPEMP3
Exome VariantEMP3
1000_GenomesEMP3 
ICGC programENSG00000142227 
Somatic Mutations in Cancer : COSMICEMP3 
CONAN: Copy Number AnalysisEMP3 
Mutations and Diseases : HGMDEMP3
Mutations and Diseases : intOGenEMP3
Genomic VariantsEMP3  EMP3 [DGVbeta]
dbVarEMP3
ClinVarEMP3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM602335   
MedgenEMP3
GENETestsEMP3
Disease Genetic AssociationEMP3
Huge Navigator EMP3 [HugePedia]  EMP3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneEMP3
Homology/Alignments : Family Browser (UCSC)EMP3
Phylogenetic Trees/Animal Genes : TreeFamEMP3
Chemical/Protein Interactions : CTD2014
Chemical/Pharm GKB GenePA27772
Clinical trialEMP3
Cancer Resource (Charite)ENSG00000142227
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
CoreMineEMP3
iHOPEMP3
OncoSearchEMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:45:47 CEST 2014

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