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EMR2 (egf-like module containing, mucin-like, hormone receptor-like 2)

Identity

Other namesCD312
HGNC (Hugo) EMR2
LocusID (NCBI) 30817
Location 19p13.12
Location_base_pair Starts at 14843509 and ends at 14887739 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)EMR2   3337
Cards
Entrez_Gene (NCBI)EMR2  30817  egf-like module containing, mucin-like, hormone receptor-like 2
GeneCards (Weizmann)EMR2
Ensembl (Hinxton)ENSG00000127507 [Gene_View]  chr19:14843509-14887739 [Contig_View]  EMR2 [Vega]
ICGC DataPortalENSG00000127507
cBioPortalEMR2
AceView (NCBI)EMR2
Genatlas (Paris)EMR2
WikiGenes30817
SOURCE (Princeton)NM_001271052 NM_013447 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921
Genomic and cartography
GoldenPath (UCSC)EMR2  -  19p13.12   chr19:14843509-14887739 -  19p13.12   [Description]    (hg19-Feb_2009)
EnsemblEMR2 - 19p13.12 [CytoView]
Mapping of homologs : NCBIEMR2 [Mapview]
OMIM606100   
Gene and transcription
Genbank (Entrez)AF114491 AK024426 AK024454 AK222891 AK291776
RefSeq transcript (Entrez)NM_001271052 NM_013447 NM_152916 NM_152917 NM_152918 NM_152919 NM_152920 NM_152921
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838484 NW_004929414
Consensus coding sequences : CCDS (NCBI)EMR2
Cluster EST : UnigeneHs.531619 [ NCBI ]
CGAP (NCI)Hs.531619
Alternative Splicing : Fast-db (Paris)GSHG0015571
Alternative Splicing GalleryENSG00000127507
Gene ExpressionEMR2 [ NCBI-GEO ]     EMR2 [ SEEK ]   EMR2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHX3 (Uniprot)
NextProtQ9UHX3  [Medical]
With graphics : InterProQ9UHX3
Splice isoforms : SwissVarQ9UHX3 (Swissvar)
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_3 (PS50026)    EGF_CA (PS01187)    G_PROTEIN_RECEP_F2_2 (PS00650)    G_PROTEIN_RECEP_F2_4 (PS50261)    GPS (PS50221)   
Domains : Interpro (EBI)EG-like_dom [organisation]   EGF-like_Ca-bd_dom [organisation]   EGF-type_Asp/Asn_hydroxyl_site [organisation]   EGF_Ca-bd_CS [organisation]   GPCR_2-like [organisation]   GPCR_2_CD97 [organisation]   GPCR_2_secretin-like [organisation]   GPCR_2_secretin-like_CS [organisation]   GPS [organisation]   Growth_fac_rcpt_N_dom [organisation]  
Related proteins : CluSTrQ9UHX3
Domain families : Pfam (Sanger)7tm_2 (PF00002)    EGF_CA (PF07645)    GPS (PF01825)   
Domain families : Pfam (NCBI)pfam00002    pfam07645    pfam01825   
Domain families : Smart (EMBL)EGF_CA (SM00179)  GPS (SM00303)  
DMDM Disease mutations30817
Blocks (Seattle)Q9UHX3
PDB (SRS)2BO2    2BOU    2BOX   
PDB (PDBSum)2BO2    2BOU    2BOX   
PDB (IMB)2BO2    2BOU    2BOX   
PDB (RSDB)2BO2    2BOU    2BOX   
Human Protein AtlasENSG00000127507 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9UHX3
HPRD07308
IPIIPI00296277   IPI00375382   IPI00183280   IPI00183838   IPI00549702   IPI00744940   IPI00909910   IPI00910804   IPI00644566   IPI00375383   IPI00375384   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHX3
IntAct (EBI)Q9UHX3
FunCoupENSG00000127507
BioGRIDEMR2
InParanoidQ9UHX3
Interologous Interaction database Q9UHX3
IntegromeDBEMR2
STRING (EMBL)EMR2
Ontologies - Pathways
Ontology : AmiGOG-protein coupled receptor activity  calcium ion binding  plasma membrane  inflammatory response  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  integral component of membrane  cell migration  leading edge membrane  ruffle membrane  chondroitin sulfate binding  granulocyte chemotaxis  
Ontology : EGO-EBIG-protein coupled receptor activity  calcium ion binding  plasma membrane  inflammatory response  cell adhesion  G-protein coupled receptor signaling pathway  neuropeptide signaling pathway  integral component of membrane  cell migration  leading edge membrane  ruffle membrane  chondroitin sulfate binding  granulocyte chemotaxis  
Protein Interaction DatabaseEMR2
Wikipedia pathwaysEMR2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EMR2
snp3D : Map Gene to Disease30817
SNP (GeneSNP Utah)EMR2
SNP : HGBaseEMR2
Genetic variants : HAPMAPEMR2
Exome VariantEMR2
1000_GenomesEMR2 
ICGC programENSG00000127507 
Somatic Mutations in Cancer : COSMICEMR2 
CONAN: Copy Number AnalysisEMR2 
Mutations and Diseases : HGMDEMR2
Mutations and Diseases : intOGenEMR2
Genomic VariantsEMR2  EMR2 [DGVbeta]
dbVarEMR2
ClinVarEMR2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM606100   
MedgenEMR2
GENETestsEMR2
Disease Genetic AssociationEMR2
Huge Navigator EMR2 [HugePedia]  EMR2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneEMR2
Homology/Alignments : Family Browser (UCSC)EMR2
Phylogenetic Trees/Animal Genes : TreeFamEMR2
Chemical/Protein Interactions : CTD30817
Chemical/Pharm GKB GenePA27774
Clinical trialEMR2
Cancer Resource (Charite)ENSG00000127507
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineEMR2
iHOPEMR2
OncoSearchEMR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:45:47 CEST 2014

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