Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EMX2OS (EMX2 opposite strand/antisense RNA)

Identity

Alias_namesempty spiracles homeobox 2 opposite strand
EMX2 opposite strand (non-protein coding)
EMX2 opposite strand/antisense RNA (non-protein coding)
Alias_symbol (synonym)NCRNA00045
EMX2-AS1
Other alias
HGNC (Hugo) EMX2OS
LocusID (NCBI) 196047
Atlas_Id 58093
Location 10q26.11  [Link to chromosome band 10q26]
Location_base_pair Starts at 117484293 and ends at 117542589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(10;10)(q25;q26) SHTN1/EMX2OS

External links

Nomenclature
HGNC (Hugo)EMX2OS   18511
Cards
Entrez_Gene (NCBI)EMX2OS  196047  EMX2 opposite strand/antisense RNA
AliasesEMX2-AS1; NCRNA00045
GeneCards (Weizmann)EMX2OS
Ensembl hg19 (Hinxton)ENSG00000229847 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229847 [Gene_View]  ENSG00000229847 [Sequence]  chr10:117484293-117542589 [Contig_View]  EMX2OS [Vega]
ICGC DataPortalENSG00000229847
TCGA cBioPortalEMX2OS
AceView (NCBI)EMX2OS
Genatlas (Paris)EMX2OS
WikiGenes196047
SOURCE (Princeton)EMX2OS
Genetics Home Reference (NIH)EMX2OS
Genomic and cartography
GoldenPath hg38 (UCSC)EMX2OS  -     chr10:117484293-117542589 -  10q26.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EMX2OS  -     10q26.11   [Description]    (hg19-Feb_2009)
GoldenPathEMX2OS - 10q26.11 [CytoView hg19]  EMX2OS - 10q26.11 [CytoView hg38]
ImmunoBaseENSG00000229847
Mapping of homologs : NCBIEMX2OS [Mapview hg19]  EMX2OS [Mapview hg38]
OMIM607637   
Gene and transcription
Genbank (Entrez)AK123533 AL137578 AY117034 AY117413 BC040186
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EMX2OS
Alternative Splicing GalleryENSG00000229847
Gene ExpressionEMX2OS [ NCBI-GEO ]   EMX2OS [ EBI - ARRAY_EXPRESS ]   EMX2OS [ SEEK ]   EMX2OS [ MEM ]
Gene Expression Viewer (FireBrowse)EMX2OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)196047
GTEX Portal (Tissue expression)EMX2OS
Human Protein AtlasENSG00000229847-EMX2OS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EMX2OS
DMDM Disease mutations196047
Blocks (Seattle)EMX2OS
Human Protein Atlas [tissue]ENSG00000229847-EMX2OS [tissue]
Protein Interaction databases
FunCoupENSG00000229847
BioGRIDEMX2OS
STRING (EMBL)EMX2OS
ZODIACEMX2OS
Ontologies - Pathways
Huge Navigator EMX2OS [HugePedia]
snp3D : Map Gene to Disease196047
BioCentury BCIQEMX2OS
ClinGenEMX2OS
Clinical trials, drugs, therapy
Protein Interactions : CTD196047
Pharm GKB GenePA134959888
Clinical trialEMX2OS
Miscellaneous
canSAR (ICR)EMX2OS (select the gene name)
HarmonizomeEMX2OS
DataMed IndexEMX2OS
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEMX2OS
EVEXEMX2OS
GoPubMedEMX2OS
iHOPEMX2OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:15:14 CEST 2020
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