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ENDOD1 (endonuclease domain containing 1)

Identity

Alias_symbol (synonym)KIAA0830
Other alias-
HGNC (Hugo) ENDOD1
LocusID (NCBI) 23052
Atlas_Id 54283
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 95089810 and ends at 95132651 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ENDOD1   29129
Cards
Entrez_Gene (NCBI)ENDOD1  23052  endonuclease domain containing 1
Aliases
GeneCards (Weizmann)ENDOD1
Ensembl hg19 (Hinxton)ENSG00000149218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149218 [Gene_View]  chr11:95089810-95132651 [Contig_View]  ENDOD1 [Vega]
ICGC DataPortalENSG00000149218
TCGA cBioPortalENDOD1
AceView (NCBI)ENDOD1
Genatlas (Paris)ENDOD1
WikiGenes23052
SOURCE (Princeton)ENDOD1
Genetics Home Reference (NIH)ENDOD1
Genomic and cartography
GoldenPath hg38 (UCSC)ENDOD1  -     chr11:95089810-95132651 +  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ENDOD1  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblENDOD1 - 11q21 [CytoView hg19]  ENDOD1 - 11q21 [CytoView hg38]
Mapping of homologs : NCBIENDOD1 [Mapview hg19]  ENDOD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB020637 AF131747 AK026560 AK291673 BC026191
RefSeq transcript (Entrez)NM_015036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ENDOD1
Cluster EST : UnigeneHs.167115 [ NCBI ]
CGAP (NCI)Hs.167115
Alternative Splicing GalleryENSG00000149218
Gene ExpressionENDOD1 [ NCBI-GEO ]   ENDOD1 [ EBI - ARRAY_EXPRESS ]   ENDOD1 [ SEEK ]   ENDOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ENDOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23052
GTEX Portal (Tissue expression)ENDOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94919   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94919  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94919
Splice isoforms : SwissVarO94919
Catalytic activity : Enzyme3.1.30.- [ Enzyme-Expasy ]   3.1.30.-3.1.30.- [ IntEnz-EBI ]   3.1.30.- [ BRENDA ]   3.1.30.- [ KEGG ]   
PhosPhoSitePlusO94919
Domains : Interpro (EBI)DNA/RNA_non-sp_Endonuclease    Extracellular_endonuc_su_A   
Domain families : Pfam (Sanger)Endonuclease_NS (PF01223)   
Domain families : Pfam (NCBI)pfam01223   
Domain families : Smart (EMBL)Endonuclease_NS (SM00892)  NUC (SM00477)  
Conserved Domain (NCBI)ENDOD1
DMDM Disease mutations23052
Blocks (Seattle)ENDOD1
SuperfamilyO94919
Human Protein AtlasENSG00000149218
Peptide AtlasO94919
IPIIPI00001952   
Protein Interaction databases
DIP (DOE-UCLA)O94919
IntAct (EBI)O94919
FunCoupENSG00000149218
BioGRIDENDOD1
STRING (EMBL)ENDOD1
ZODIACENDOD1
Ontologies - Pathways
QuickGOO94919
Ontology : AmiGOplatelet degranulation  nucleic acid binding  endonuclease activity  extracellular region  cytosol  membrane  metal ion binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIplatelet degranulation  nucleic acid binding  endonuclease activity  extracellular region  cytosol  membrane  metal ion binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkENDOD1
Atlas of Cancer Signalling NetworkENDOD1
Wikipedia pathwaysENDOD1
Orthology - Evolution
OrthoDB23052
GeneTree (enSembl)ENSG00000149218
Phylogenetic Trees/Animal Genes : TreeFamENDOD1
HOVERGENO94919
HOGENOMO94919
Homologs : HomoloGeneENDOD1
Homology/Alignments : Family Browser (UCSC)ENDOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerENDOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ENDOD1
dbVarENDOD1
ClinVarENDOD1
1000_GenomesENDOD1 
Exome Variant ServerENDOD1
ExAC (Exome Aggregation Consortium)ENDOD1 (select the gene name)
Genetic variants : HAPMAP23052
Genomic Variants (DGV)ENDOD1 [DGVbeta]
DECIPHERENDOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisENDOD1 
Mutations
ICGC Data PortalENDOD1 
TCGA Data PortalENDOD1 
Broad Tumor PortalENDOD1
OASIS PortalENDOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICENDOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDENDOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ENDOD1
DgiDB (Drug Gene Interaction Database)ENDOD1
DoCM (Curated mutations)ENDOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ENDOD1 (select a term)
intoGenENDOD1
Cancer3DENDOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenENDOD1
Genetic Testing Registry ENDOD1
NextProtO94919 [Medical]
TSGene23052
GENETestsENDOD1
Target ValidationENDOD1
Huge Navigator ENDOD1 [HugePedia]
snp3D : Map Gene to Disease23052
BioCentury BCIQENDOD1
ClinGenENDOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23052
Chemical/Pharm GKB GenePA143485454
Clinical trialENDOD1
Miscellaneous
canSAR (ICR)ENDOD1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineENDOD1
EVEXENDOD1
GoPubMedENDOD1
iHOPENDOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:32:35 CEST 2017

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