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ENDOD1 (endonuclease domain containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) ENDOD1
HGNC Alias symbKIAA0830
LocusID (NCBI) 23052
Atlas_Id 54283
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 95089846 and ends at 95132645 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ENDOD1   29129
Cards
Entrez_Gene (NCBI)ENDOD1    endonuclease domain containing 1
Aliases
GeneCards (Weizmann)ENDOD1
Ensembl hg19 (Hinxton)ENSG00000149218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149218 [Gene_View]  ENSG00000149218 [Sequence]  chr11:95089846-95132645 [Contig_View]  ENDOD1 [Vega]
ICGC DataPortalENSG00000149218
TCGA cBioPortalENDOD1
AceView (NCBI)ENDOD1
Genatlas (Paris)ENDOD1
SOURCE (Princeton)ENDOD1
Genetics Home Reference (NIH)ENDOD1
Genomic and cartography
GoldenPath hg38 (UCSC)ENDOD1  -     chr11:95089846-95132645 +  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ENDOD1  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathENDOD1 - 11q21 [CytoView hg19]  ENDOD1 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000149218
Genome Data Viewer NCBIENDOD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB020637 AF131747 AK026560 AK291673 BC026191
RefSeq transcript (Entrez)NM_015036
Consensus coding sequences : CCDS (NCBI)ENDOD1
Gene ExpressionENDOD1 [ NCBI-GEO ]   ENDOD1 [ EBI - ARRAY_EXPRESS ]   ENDOD1 [ SEEK ]   ENDOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ENDOD1 [ Firebrowse - Broad ]
GenevisibleExpression of ENDOD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23052
GTEX Portal (Tissue expression)ENDOD1
Human Protein AtlasENSG00000149218-ENDOD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94919   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94919  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94919
Catalytic activity : Enzyme3.1.30.- [ Enzyme-Expasy ]   3.1.30.-3.1.30.- [ IntEnz-EBI ]   3.1.30.- [ BRENDA ]   3.1.30.- [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusO94919
Domains : Interpro (EBI)DNA/RNA_non-sp_Endonuclease    ENDOD1    Extracellular_endonuc_su_A   
Domain families : Pfam (Sanger)Endonuclease_NS (PF01223)   
Domain families : Pfam (NCBI)pfam01223   
Domain families : Smart (EMBL)Endonuclease_NS (SM00892)  NUC (SM00477)  
Conserved Domain (NCBI)ENDOD1
SuperfamilyO94919
AlphaFold pdb e-kbO94919   
Human Protein Atlas [tissue]ENSG00000149218-ENDOD1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)O94919
IntAct (EBI)O94919
BioGRIDENDOD1
STRING (EMBL)ENDOD1
ZODIACENDOD1
Ontologies - Pathways
QuickGOO94919
Ontology : AmiGOplatelet degranulation  nucleic acid binding  endonuclease activity  protein binding  extracellular region  cytosol  membrane  metal ion binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
Ontology : EGO-EBIplatelet degranulation  nucleic acid binding  endonuclease activity  protein binding  extracellular region  cytosol  membrane  metal ion binding  extracellular exosome  nucleic acid phosphodiester bond hydrolysis  
NDEx NetworkENDOD1
Atlas of Cancer Signalling NetworkENDOD1
Wikipedia pathwaysENDOD1
Orthology - Evolution
OrthoDB23052
GeneTree (enSembl)ENSG00000149218
Phylogenetic Trees/Animal Genes : TreeFamENDOD1
Homologs : HomoloGeneENDOD1
Homology/Alignments : Family Browser (UCSC)ENDOD1
Gene fusions - Rearrangements
Fusion : QuiverENDOD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerENDOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ENDOD1
dbVarENDOD1
ClinVarENDOD1
MonarchENDOD1
1000_GenomesENDOD1 
Exome Variant ServerENDOD1
GNOMAD BrowserENSG00000149218
Varsome BrowserENDOD1
ACMGENDOD1 variants
VarityO94919
Genomic Variants (DGV)ENDOD1 [DGVbeta]
DECIPHERENDOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisENDOD1 
Mutations
ICGC Data PortalENDOD1 
TCGA Data PortalENDOD1 
Broad Tumor PortalENDOD1
OASIS PortalENDOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICENDOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DENDOD1
Mutations and Diseases : HGMDENDOD1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaENDOD1
DgiDB (Drug Gene Interaction Database)ENDOD1
DoCM (Curated mutations)ENDOD1
CIViC (Clinical Interpretations of Variants in Cancer)ENDOD1
Cancer3DENDOD1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETENDOD1
MedgenENDOD1
Genetic Testing Registry ENDOD1
NextProtO94919 [Medical]
GENETestsENDOD1
Target ValidationENDOD1
Huge Navigator ENDOD1 [HugePedia]
ClinGenENDOD1
Clinical trials, drugs, therapy
MyCancerGenomeENDOD1
Protein Interactions : CTDENDOD1
Pharm GKB GenePA143485454
PharosO94919
Clinical trialENDOD1
Miscellaneous
canSAR (ICR)ENDOD1
HarmonizomeENDOD1
DataMed IndexENDOD1
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXENDOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:08:10 CEST 2021

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