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EOGT (EGF domain specific O-linked N-acetylglucosamine transferase)

Identity

Alias_namesC3orf64
chromosome 3 open reading frame 64
EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
Alias_symbol (synonym)AER61
FLJ33770
Other aliasAOS4
EOGT1
HGNC (Hugo) EOGT
LocusID (NCBI) 285203
Atlas_Id 62850
Location 3p14.1  [Link to chromosome band 3p14]
Location_base_pair Starts at 68975212 and ends at 69013894 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TMF1 (3p14.1) / EOGT (3p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EOGT   28526
Cards
Entrez_Gene (NCBI)EOGT  285203  EGF domain specific O-linked N-acetylglucosamine transferase
AliasesAER61; AOS4; C3orf64; EOGT1
GeneCards (Weizmann)EOGT
Ensembl hg19 (Hinxton)ENSG00000163378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163378 [Gene_View]  chr3:68975212-69013894 [Contig_View]  EOGT [Vega]
ICGC DataPortalENSG00000163378
TCGA cBioPortalEOGT
AceView (NCBI)EOGT
Genatlas (Paris)EOGT
WikiGenes285203
SOURCE (Princeton)EOGT
Genetics Home Reference (NIH)EOGT
Genomic and cartography
GoldenPath hg38 (UCSC)EOGT  -     chr3:68975212-69013894 -  3p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EOGT  -     3p14.1   [Description]    (hg19-Feb_2009)
EnsemblEOGT - 3p14.1 [CytoView hg19]  EOGT - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIEOGT [Mapview hg19]  EOGT [Mapview hg38]
OMIM614789   615297   
Gene and transcription
Genbank (Entrez)AA709285 AJ868234 AK023140 AK091089 AK123213
RefSeq transcript (Entrez)NM_001278689 NM_173654
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EOGT
Cluster EST : UnigeneHs.518059 [ NCBI ]
CGAP (NCI)Hs.518059
Alternative Splicing GalleryENSG00000163378
Gene ExpressionEOGT [ NCBI-GEO ]   EOGT [ EBI - ARRAY_EXPRESS ]   EOGT [ SEEK ]   EOGT [ MEM ]
Gene Expression Viewer (FireBrowse)EOGT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285203
GTEX Portal (Tissue expression)EOGT
Human Protein AtlasENSG00000163378-EOGT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5NDL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5NDL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5NDL2
Splice isoforms : SwissVarQ5NDL2
PhosPhoSitePlusQ5NDL2
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Glycosyltransferase_61   
Domain families : Pfam (Sanger)DUF563 (PF04577)   
Domain families : Pfam (NCBI)pfam04577   
Conserved Domain (NCBI)EOGT
DMDM Disease mutations285203
Blocks (Seattle)EOGT
SuperfamilyQ5NDL2
Human Protein Atlas [tissue]ENSG00000163378-EOGT [tissue]
Peptide AtlasQ5NDL2
HPRD12435
IPIIPI00396231   IPI00856087   IPI00747743   IPI01011019   IPI00549225   IPI01018839   IPI00925353   IPI00925626   
Protein Interaction databases
DIP (DOE-UCLA)Q5NDL2
IntAct (EBI)Q5NDL2
FunCoupENSG00000163378
BioGRIDEOGT
STRING (EMBL)EOGT
ZODIACEOGT
Ontologies - Pathways
QuickGOQ5NDL2
Ontology : AmiGOendoplasmic reticulum lumen  protein O-linked glycosylation  protein N-acetylglucosaminyltransferase activity  
Ontology : EGO-EBIendoplasmic reticulum lumen  protein O-linked glycosylation  protein N-acetylglucosaminyltransferase activity  
NDEx NetworkEOGT
Atlas of Cancer Signalling NetworkEOGT
Wikipedia pathwaysEOGT
Orthology - Evolution
OrthoDB285203
GeneTree (enSembl)ENSG00000163378
Phylogenetic Trees/Animal Genes : TreeFamEOGT
HOVERGENQ5NDL2
HOGENOMQ5NDL2
Homologs : HomoloGeneEOGT
Homology/Alignments : Family Browser (UCSC)EOGT
Gene fusions - Rearrangements
Fusion: Tumor Portal EOGT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEOGT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EOGT
dbVarEOGT
ClinVarEOGT
1000_GenomesEOGT 
Exome Variant ServerEOGT
ExAC (Exome Aggregation Consortium)ENSG00000163378
GNOMAD BrowserENSG00000163378
Genetic variants : HAPMAP285203
Genomic Variants (DGV)EOGT [DGVbeta]
DECIPHEREOGT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEOGT 
Mutations
ICGC Data PortalEOGT 
TCGA Data PortalEOGT 
Broad Tumor PortalEOGT
OASIS PortalEOGT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEOGT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEOGT
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EOGT
DgiDB (Drug Gene Interaction Database)EOGT
DoCM (Curated mutations)EOGT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EOGT (select a term)
intoGenEOGT
Cancer3DEOGT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614789    615297   
Orphanet1294   
MedgenEOGT
Genetic Testing Registry EOGT
NextProtQ5NDL2 [Medical]
TSGene285203
GENETestsEOGT
Target ValidationEOGT
Huge Navigator EOGT [HugePedia]
snp3D : Map Gene to Disease285203
BioCentury BCIQEOGT
ClinGenEOGT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285203
Chemical/Pharm GKB GenePA143485338
Clinical trialEOGT
Miscellaneous
canSAR (ICR)EOGT (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEOGT
EVEXEOGT
GoPubMedEOGT
iHOPEOGT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:45:50 CET 2017

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