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EP400NL (EP400 N-terminal like)

Identity

Alias_symbol (synonym)FLJ33915
Other alias-
HGNC (Hugo) EP400NL
LocusID (NCBI) 347918
Atlas_Id 62852
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132569025 and ends at 132593443 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF330 (4q31.21) / EP400NL (12q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EP400NL   26602
Cards
Entrez_Gene (NCBI)EP400NL  347918  EP400 N-terminal like
Aliases
GeneCards (Weizmann)EP400NL
Ensembl hg19 (Hinxton)ENSG00000185684 [Gene_View]  chr12:132569025-132593443 [Contig_View]  EP400NL [Vega]
Ensembl hg38 (Hinxton)ENSG00000185684 [Gene_View]  chr12:132569025-132593443 [Contig_View]  EP400NL [Vega]
ICGC DataPortalENSG00000185684
TCGA cBioPortalEP400NL
AceView (NCBI)EP400NL
Genatlas (Paris)EP400NL
WikiGenes347918
SOURCE (Princeton)EP400NL
Genetics Home Reference (NIH)EP400NL
Genomic and cartography
GoldenPath hg19 (UCSC)EP400NL  -     chr12:132569025-132593443 +  12q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EP400NL  -     12q24.33   [Description]    (hg38-Dec_2013)
EnsemblEP400NL - 12q24.33 [CytoView hg19]  EP400NL - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIEP400NL [Mapview hg19]  EP400NL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090610 AK091234 AK097720 AK126212 AK128208
RefSeq transcript (Entrez)NM_182613
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929386
Consensus coding sequences : CCDS (NCBI)EP400NL
Cluster EST : UnigeneHs.122115 [ NCBI ]
CGAP (NCI)Hs.122115
Alternative Splicing GalleryENSG00000185684
Gene ExpressionEP400NL [ NCBI-GEO ]   EP400NL [ EBI - ARRAY_EXPRESS ]   EP400NL [ SEEK ]   EP400NL [ MEM ]
Gene Expression Viewer (FireBrowse)EP400NL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347918
GTEX Portal (Tissue expression)EP400NL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZTU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZTU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZTU2
Splice isoforms : SwissVarQ6ZTU2
PhosPhoSitePlusQ6ZTU2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EP400NL
DMDM Disease mutations347918
Blocks (Seattle)EP400NL
SuperfamilyQ6ZTU2
Human Protein AtlasENSG00000185684
Peptide AtlasQ6ZTU2
HPRD13413
IPIIPI00445309   IPI00295968   IPI00384652   IPI00789429   IPI00885012   IPI01015737   IPI00853177   IPI00433444   IPI01015816   IPI00793943   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZTU2
IntAct (EBI)Q6ZTU2
FunCoupENSG00000185684
BioGRIDEP400NL
STRING (EMBL)EP400NL
ZODIACEP400NL
Ontologies - Pathways
QuickGOQ6ZTU2
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEP400NL
Atlas of Cancer Signalling NetworkEP400NL
Wikipedia pathwaysEP400NL
Orthology - Evolution
OrthoDB347918
GeneTree (enSembl)ENSG00000185684
Phylogenetic Trees/Animal Genes : TreeFamEP400NL
HOVERGENQ6ZTU2
HOGENOMQ6ZTU2
Homologs : HomoloGeneEP400NL
Homology/Alignments : Family Browser (UCSC)EP400NL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEP400NL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EP400NL
dbVarEP400NL
ClinVarEP400NL
1000_GenomesEP400NL 
Exome Variant ServerEP400NL
ExAC (Exome Aggregation Consortium)EP400NL (select the gene name)
Genetic variants : HAPMAP347918
Genomic Variants (DGV)EP400NL [DGVbeta]
DECIPHER (Syndromes)12:132569025-132593443  ENSG00000185684
CONAN: Copy Number AnalysisEP400NL 
Mutations
ICGC Data PortalEP400NL 
TCGA Data PortalEP400NL 
Broad Tumor PortalEP400NL
OASIS PortalEP400NL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEP400NL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEP400NL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EP400NL
DgiDB (Drug Gene Interaction Database)EP400NL
DoCM (Curated mutations)EP400NL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EP400NL (select a term)
intoGenEP400NL
Cancer3DEP400NL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEP400NL
Genetic Testing Registry EP400NL
NextProtQ6ZTU2 [Medical]
TSGene347918
GENETestsEP400NL
Huge Navigator EP400NL [HugePedia]
snp3D : Map Gene to Disease347918
BioCentury BCIQEP400NL
ClinGenEP400NL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347918
Chemical/Pharm GKB GenePA143485455
Clinical trialEP400NL
Miscellaneous
canSAR (ICR)EP400NL (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEP400NL
EVEXEP400NL
GoPubMedEP400NL
iHOPEP400NL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:57 CET 2017

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