Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EPB41L4A-AS1 (EPB41L4A antisense RNA 1)

Identity

Alias_namesC5orf26
NCRNA00219
chromosome 5 open reading frame 26
non-protein coding RNA 219
EPB41L4A antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)TIGA1
Other alias
HGNC (Hugo) EPB41L4A-AS1
LocusID (NCBI) 114915
Atlas_Id 62856
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 112160896 and ends at 112162294 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EPB41L4A-AS1   30749
Cards
Entrez_Gene (NCBI)EPB41L4A-AS1  114915  EPB41L4A antisense RNA 1
AliasesC5orf26; NCRNA00219; TIGA1
GeneCards (Weizmann)EPB41L4A-AS1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:112160896-112162294 [Contig_View]  EPB41L4A-AS1 [Vega]
TCGA cBioPortalEPB41L4A-AS1
AceView (NCBI)EPB41L4A-AS1
Genatlas (Paris)EPB41L4A-AS1
WikiGenes114915
SOURCE (Princeton)EPB41L4A-AS1
Genetics Home Reference (NIH)EPB41L4A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)EPB41L4A-AS1  -     chr5:112160896-112162294 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EPB41L4A-AS1  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblEPB41L4A-AS1 - 5q22.1 [CytoView hg19]  EPB41L4A-AS1 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBIEPB41L4A-AS1 [Mapview hg19]  EPB41L4A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002437 AB048207 BC101844 BC112077 DA266578
RefSeq transcript (Entrez)NM_053000
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EPB41L4A-AS1
Cluster EST : UnigeneHs.12082 [ NCBI ]
CGAP (NCI)Hs.12082
Gene ExpressionEPB41L4A-AS1 [ NCBI-GEO ]   EPB41L4A-AS1 [ EBI - ARRAY_EXPRESS ]   EPB41L4A-AS1 [ SEEK ]   EPB41L4A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)EPB41L4A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)114915
GTEX Portal (Tissue expression)EPB41L4A-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EPB41L4A-AS1
DMDM Disease mutations114915
Blocks (Seattle)EPB41L4A-AS1
HPRD18184
IPIIPI00044744   
Protein Interaction databases
BioGRIDEPB41L4A-AS1
STRING (EMBL)EPB41L4A-AS1
ZODIACEPB41L4A-AS1
Ontologies - Pathways
Huge Navigator EPB41L4A-AS1 [HugePedia]
snp3D : Map Gene to Disease114915
BioCentury BCIQEPB41L4A-AS1
ClinGenEPB41L4A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114915
Chemical/Pharm GKB GenePA165660388
Clinical trialEPB41L4A-AS1
Miscellaneous
canSAR (ICR)EPB41L4A-AS1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPB41L4A-AS1
EVEXEPB41L4A-AS1
GoPubMedEPB41L4A-AS1
iHOPEPB41L4A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:09 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.