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EPB41L5 (erythrocyte membrane protein band 4.1 like 5)

Identity

Other namesBE37
YMO1
HGNC (Hugo) EPB41L5
LocusID (NCBI) 57669
Location 2q14.2
Location_base_pair Starts at 120770604 and ends at 120936697 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)EPB41L5   19819
Entrez_Gene (NCBI)EPB41L5  57669  erythrocyte membrane protein band 4.1 like 5
Cards
GeneCards (Weizmann)EPB41L5
Ensembl (Hinxton)ENSG00000115109 [Gene_View]  chr2:120770604-120936697 [Contig_View]  EPB41L5 [Vega]
AceView (NCBI)EPB41L5
Genatlas (Paris)EPB41L5
SOURCE (Stanford)NM_001184937 NM_001184938 NM_001184939 NM_020909
Genomic and cartography
GoldenPath (UCSC)EPB41L5  -  2q14.2   chr2:120770604-120936697 +  2q14.2   [Description]    (hg19-Feb_2009)
EnsemblEPB41L5 - 2q14.2 [CytoView]
Mapping of homologs : NCBIEPB41L5 [Mapview]
OMIM611730   
Gene and transcription
Genbank (Entrez)AB046768 AK023019 AK290895 AK304831 AK307458
RefSeq transcript (SRS)NM_001184937 NM_001184938 NM_001184939 NM_020909
RefSeq transcript (Entrez)NM_001184937 NM_001184938 NM_001184939 NM_020909
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_022135 NW_001838847 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_022135 NW_001838847 NW_004078008
Consensus coding sequences : CCDS (NCBI)EPB41L5
Cluster EST : UnigeneHs.369232 [ SRS ] Hs.369232 [ NCBI ]
CGAP (NCI)Hs.369232
Alternative Splicing : Fast-db (Paris)GSHG0016822
Alternative Splicing GalleryENSG00000115109
Gene ExpressionEPB41L5 [ NCBI-GEO ]   EPB41L5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCM4 (SRS) Q9HCM4 (Uniprot)
NextProtQ9HCM4
With graphics : InterProQ9HCM4
Splice isoforms : SwissVarQ9HCM4(Swissvar)
Domaine pattern : Prosite (SRS)FERM_1 (PS00660)    FERM_2 (PS00661)    FERM_3 (PS50057)   
Domaine pattern : Prosite (Expaxy)FERM_1 (PS00660)    FERM_2 (PS00661)    FERM_3 (PS50057)   
Domains : Interpro (SRS)Band_41_domain    Band_41_fam    Ez/rad/moesin    FERM-adjacent    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_CS    FERM_domain    FERM_N    FERM_PH-like_C    PH_like_dom   
Domains : Interpro (EBI)Band_41_domain    Band_41_fam    Ez/rad/moesin    FERM-adjacent    FERM/acyl-CoA-bd_prot_3-hlx    FERM_central    FERM_CS    FERM_domain    FERM_N    FERM_PH-like_C    PH_like_dom   
Related proteins : CluSTrQ9HCM4
Domain families : Pfam (SRS)FA (PF08736)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (Sanger)FA (PF08736)    FERM_C (PF09380)    FERM_M (PF00373)    FERM_N (PF09379)   
Domain families : Pfam (NCBI)pfam08736    pfam09380    pfam00373    pfam09379   
Domain families : Smart (EMBL)B41 (SM00295)  
DMDM57669
Blocks (Seattle)Q9HCM4
Human Protein AtlasENSG00000115109
HPRD13273
IPIIPI00376221   IPI00217841   IPI00890731   IPI00890719   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCM4
IntAct (EBI)Q9HCM4
FunCoupENSG00000115109
REACTOMEEPB41L5
Protein Interaction Database57669
BioGRIDEPB41L5
InParanoidQ9HCM4
Interologous Interaction database Q9HCM4
IntegromeDBEPB41L5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EPB41L5
SNP (GeneSNP Utah)EPB41L5
SNP : HGBaseEPB41L5
Genetic variants : HAPMAPEPB41L5
Somatic Mutations in Cancer : COSMICEPB41L5 
CONAN: Copy Number AnalysisEPB41L5 
Mutations and Diseases : HGMDEPB41L5
OMIM611730   
GENETests611730   
Disease Genetic AssociationEPB41L5
Huge Navigator EPB41L5 [HugePedia]  EPB41L5 [HugeCancerGEM]
Genomic VariantsEPB41L5  EPB41L5 [DGVbeta]
snp3D : Map Gene to Disease57669
General knowledge
Homologs : HomoloGeneEPB41L5
Homology/Alignments : Family Browser (UCSC)EPB41L5
Phylogenetic Trees/Animal Genes : TreeFamEPB41L5
Chemical/Protein Interactions : CTD57669
Chemical/Pharm GKB GenePA134862834
Clinical trialEPB41L5
Cancer Resource (Charite)ENSG00000115109
Ontology : AmiGOin utero embryonic development  epithelial to mesenchymal transition  neural plate morphogenesis  apical constriction  cytoplasm  cytoskeleton  focal adhesion  substrate-dependent cell migration, cell attachment to substrate  ectoderm development  endoderm development  mesoderm migration involved in gastrulation  cytoskeletal protein binding  unidimensional cell growth  posttranscriptional regulation of gene expression  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  extrinsic to membrane  protein domain specific binding  negative regulation of cell-cell adhesion  actomyosin structure organization  negative regulation of protein binding  positive regulation of protein binding  somite rostral/caudal axis specification  ruffle membrane  axial mesoderm morphogenesis  paraxial mesoderm development  embryonic foregut morphogenesis  positive regulation of focal adhesion assembly  regulation of establishment of protein localization  left/right axis specification  cellular response to transforming growth factor beta stimulus  
Ontology : EGO-EBIin utero embryonic development  epithelial to mesenchymal transition  neural plate morphogenesis  apical constriction  cytoplasm  cytoskeleton  focal adhesion  substrate-dependent cell migration, cell attachment to substrate  ectoderm development  endoderm development  mesoderm migration involved in gastrulation  cytoskeletal protein binding  unidimensional cell growth  posttranscriptional regulation of gene expression  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  extrinsic to membrane  protein domain specific binding  negative regulation of cell-cell adhesion  actomyosin structure organization  negative regulation of protein binding  positive regulation of protein binding  somite rostral/caudal axis specification  ruffle membrane  axial mesoderm morphogenesis  paraxial mesoderm development  embryonic foregut morphogenesis  positive regulation of focal adhesion assembly  regulation of establishment of protein localization  left/right axis specification  cellular response to transforming growth factor beta stimulus  
Other databases
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
PubGeneEPB41L5
iHOPEPB41L5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:29 CEST 2013
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