Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EPC1 (enhancer of polycomb homolog 1)

Identity

Alias_namesenhancer of polycomb homolog 1 (Drosophila)
Alias_symbol (synonym)Epl1
Other alias
HGNC (Hugo) EPC1
LocusID (NCBI) 80314
Atlas_Id 42977
Location 10p11.22  [Link to chromosome band 10p11]
Location_base_pair Starts at 32267716 and ends at 32347218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		BMPR2 (2q33.1) / EPC1 (10p11.22)DDX24 (14q32.12) / EPC1 (10p11.22)EPC1 (10p11.22) / ASXL2 (2p23.3)
EPC1 (10p11.22) / BMPR2 (2q33.1)EPC1 (10p11.22) / PHF1 (6p21.32)EPC1 (10p11.22) / PTGR2 (14q24.3)
EPC1 (10p11.22) / RBM47 (4p14)EPC1 (10p11.22) / SNX5 (20p11.23)EPC1 (10p11.22) / ZEB1 (10p11.22)
LGALS4 (19q13.2) / EPC1 (10p11.22)EPC1 10p11.22 / PHF1 6p21.32EPC1 10p11.22 / PTGR2 14q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;8)(p23;p11) KAT6A/ASXL2

External links

Nomenclature
HGNC (Hugo)EPC1   19876
Cards
Entrez_Gene (NCBI)EPC1  80314  enhancer of polycomb homolog 1
AliasesEpl1
GeneCards (Weizmann)EPC1
Ensembl hg19 (Hinxton)ENSG00000120616 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120616 [Gene_View]  chr10:32267716-32347218 [Contig_View]  EPC1 [Vega]
ICGC DataPortalENSG00000120616
TCGA cBioPortalEPC1
AceView (NCBI)EPC1
Genatlas (Paris)EPC1
WikiGenes80314
SOURCE (Princeton)EPC1
Genetics Home Reference (NIH)EPC1
Genomic and cartography
GoldenPath hg38 (UCSC)EPC1  -     chr10:32267716-32347218 -  10p11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EPC1  -     10p11.22   [Description]    (hg19-Feb_2009)
EnsemblEPC1 - 10p11.22 [CytoView hg19]  EPC1 - 10p11.22 [CytoView hg38]
Mapping of homologs : NCBIEPC1 [Mapview hg19]  EPC1 [Mapview hg38]
OMIM610999   
Gene and transcription
Genbank (Entrez)AA553969 AF277374 AF286905 AK024329 AK092304
RefSeq transcript (Entrez)NM_001272004 NM_001272019 NM_001282391 NM_025209
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EPC1
Cluster EST : UnigeneHs.167805 [ NCBI ]
CGAP (NCI)Hs.167805
Alternative Splicing GalleryENSG00000120616
Gene ExpressionEPC1 [ NCBI-GEO ]   EPC1 [ EBI - ARRAY_EXPRESS ]   EPC1 [ SEEK ]   EPC1 [ MEM ]
Gene Expression Viewer (FireBrowse)EPC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80314
GTEX Portal (Tissue expression)EPC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2F5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2F5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2F5
Splice isoforms : SwissVarQ9H2F5
PhosPhoSitePlusQ9H2F5
Domains : Interpro (EBI)Enhancer_polycomb    Enhancer_polycomb-like_N    Enhancer_polycomb_C   
Domain families : Pfam (Sanger)E_Pc_C (PF06752)    EPL1 (PF10513)   
Domain families : Pfam (NCBI)pfam06752    pfam10513   
Conserved Domain (NCBI)EPC1
DMDM Disease mutations80314
Blocks (Seattle)EPC1
SuperfamilyQ9H2F5
Human Protein AtlasENSG00000120616
Peptide AtlasQ9H2F5
HPRD09941
IPIIPI00018823   IPI00302085   IPI00552203   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2F5
IntAct (EBI)Q9H2F5
FunCoupENSG00000120616
BioGRIDEPC1
STRING (EMBL)EPC1
ZODIACEPC1
Ontologies - Pathways
QuickGOQ9H2F5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  nuclear membrane  Piccolo NuA4 histone acetyltransferase complex  NuA4 histone acetyltransferase complex  vascular smooth muscle cell differentiation  regulation of growth  histone H4 acetylation  histone H2A acetylation  negative regulation of gene expression, epigenetic  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  histone acetyltransferase activity  protein binding  nucleus  nucleoplasm  nucleoplasm  transcription, DNA-templated  nuclear membrane  Piccolo NuA4 histone acetyltransferase complex  NuA4 histone acetyltransferase complex  vascular smooth muscle cell differentiation  regulation of growth  histone H4 acetylation  histone H2A acetylation  negative regulation of gene expression, epigenetic  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkEPC1
Atlas of Cancer Signalling NetworkEPC1
Wikipedia pathwaysEPC1
Orthology - Evolution
OrthoDB80314
GeneTree (enSembl)ENSG00000120616
Phylogenetic Trees/Animal Genes : TreeFamEPC1
HOVERGENQ9H2F5
HOGENOMQ9H2F5
Homologs : HomoloGeneEPC1
Homology/Alignments : Family Browser (UCSC)EPC1
Gene fusions - Rearrangements
Fusion : MitelmanEPC1/ASXL2 [10p11.22/2p23.3]  
Fusion : MitelmanEPC1/PHF1 [10p11.22/6p21.32]  [t(6;10;10)(p21;q22;p11)]  
Fusion : MitelmanEPC1/PTGR2 [10p11.22/14q24.3]  [t(10;14)(p11;q24)]  
Fusion: TCGAEPC1 10p11.22 PTGR2 14q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEPC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EPC1
dbVarEPC1
ClinVarEPC1
1000_GenomesEPC1 
Exome Variant ServerEPC1
ExAC (Exome Aggregation Consortium)EPC1 (select the gene name)
Genetic variants : HAPMAP80314
Genomic Variants (DGV)EPC1 [DGVbeta]
DECIPHEREPC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEPC1 
Mutations
ICGC Data PortalEPC1 
TCGA Data PortalEPC1 
Broad Tumor PortalEPC1
OASIS PortalEPC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEPC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEPC1
intOGen PortalEPC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EPC1
DgiDB (Drug Gene Interaction Database)EPC1
DoCM (Curated mutations)EPC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EPC1 (select a term)
intoGenEPC1
Cancer3DEPC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610999   
Orphanet
MedgenEPC1
Genetic Testing Registry EPC1
NextProtQ9H2F5 [Medical]
TSGene80314
GENETestsEPC1
Target ValidationEPC1
Huge Navigator EPC1 [HugePedia]
snp3D : Map Gene to Disease80314
BioCentury BCIQEPC1
ClinGenEPC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80314
Chemical/Pharm GKB GenePA134981141
Clinical trialEPC1
Miscellaneous
canSAR (ICR)EPC1 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPC1
EVEXEPC1
GoPubMedEPC1
iHOPEPC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:32:41 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.