Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EPHX3 (epoxide hydrolase 3)

Identity

Alias_namesABHD9
abhydrolase domain containing 9
Alias_symbol (synonym)FLJ22408
Other aliasEH3
HGNC (Hugo) EPHX3
LocusID (NCBI) 79852
Atlas_Id 50842
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 15337733 and ends at 15343858 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EPHX3   23760
Cards
Entrez_Gene (NCBI)EPHX3  79852  epoxide hydrolase 3
AliasesABHD9; EH3
GeneCards (Weizmann)EPHX3
Ensembl hg19 (Hinxton)ENSG00000105131 [Gene_View]  chr19:15337733-15343858 [Contig_View]  EPHX3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105131 [Gene_View]  chr19:15337733-15343858 [Contig_View]  EPHX3 [Vega]
ICGC DataPortalENSG00000105131
TCGA cBioPortalEPHX3
AceView (NCBI)EPHX3
Genatlas (Paris)EPHX3
WikiGenes79852
SOURCE (Princeton)EPHX3
Genetics Home Reference (NIH)EPHX3
Genomic and cartography
GoldenPath hg19 (UCSC)EPHX3  -     chr19:15337733-15343858 -  19p13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EPHX3  -     19p13.12   [Description]    (hg38-Dec_2013)
EnsemblEPHX3 - 19p13.12 [CytoView hg19]  EPHX3 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIEPHX3 [Mapview hg19]  EPHX3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026061 BC115002 BC132958 BC132960 CD632298
RefSeq transcript (Entrez)NM_001142886 NM_024794
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)EPHX3
Cluster EST : UnigeneHs.156457 [ NCBI ]
CGAP (NCI)Hs.156457
Alternative Splicing GalleryENSG00000105131
Gene ExpressionEPHX3 [ NCBI-GEO ]   EPHX3 [ EBI - ARRAY_EXPRESS ]   EPHX3 [ SEEK ]   EPHX3 [ MEM ]
Gene Expression Viewer (FireBrowse)EPHX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79852
GTEX Portal (Tissue expression)EPHX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6B9
Splice isoforms : SwissVarQ9H6B9
Catalytic activity : Enzyme3.3.-.- [ Enzyme-Expasy ]   3.3.-.-3.3.-.- [ IntEnz-EBI ]   3.3.-.- [ BRENDA ]   3.3.-.- [ KEGG ]   
PhosPhoSitePlusQ9H6B9
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    Epox_hydrolase-like   
Domain families : Pfam (Sanger)Abhydrolase_6 (PF12697)   
Domain families : Pfam (NCBI)pfam12697   
Conserved Domain (NCBI)EPHX3
DMDM Disease mutations79852
Blocks (Seattle)EPHX3
SuperfamilyQ9H6B9
Human Protein AtlasENSG00000105131
Peptide AtlasQ9H6B9
HPRD12410
IPIIPI00015658   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6B9
IntAct (EBI)Q9H6B9
FunCoupENSG00000105131
BioGRIDEPHX3
STRING (EMBL)EPHX3
ZODIACEPHX3
Ontologies - Pathways
QuickGOQ9H6B9
Ontology : AmiGOmolecular_function  cellular_component  extracellular region  biological_process  metabolic process  hydrolase activity  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular region  biological_process  metabolic process  hydrolase activity  
NDEx NetworkEPHX3
Atlas of Cancer Signalling NetworkEPHX3
Wikipedia pathwaysEPHX3
Orthology - Evolution
OrthoDB79852
GeneTree (enSembl)ENSG00000105131
Phylogenetic Trees/Animal Genes : TreeFamEPHX3
HOVERGENQ9H6B9
HOGENOMQ9H6B9
Homologs : HomoloGeneEPHX3
Homology/Alignments : Family Browser (UCSC)EPHX3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEPHX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EPHX3
dbVarEPHX3
ClinVarEPHX3
1000_GenomesEPHX3 
Exome Variant ServerEPHX3
ExAC (Exome Aggregation Consortium)EPHX3 (select the gene name)
Genetic variants : HAPMAP79852
Genomic Variants (DGV)EPHX3 [DGVbeta]
DECIPHER (Syndromes)19:15337733-15343858  ENSG00000105131
CONAN: Copy Number AnalysisEPHX3 
Mutations
ICGC Data PortalEPHX3 
TCGA Data PortalEPHX3 
Broad Tumor PortalEPHX3
OASIS PortalEPHX3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEPHX3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEPHX3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EPHX3
DgiDB (Drug Gene Interaction Database)EPHX3
DoCM (Curated mutations)EPHX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EPHX3 (select a term)
intoGenEPHX3
Cancer3DEPHX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEPHX3
Genetic Testing Registry EPHX3
NextProtQ9H6B9 [Medical]
TSGene79852
GENETestsEPHX3
Huge Navigator EPHX3 [HugePedia]
snp3D : Map Gene to Disease79852
BioCentury BCIQEPHX3
ClinGenEPHX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79852
Chemical/Pharm GKB GenePA164719188
Clinical trialEPHX3
Miscellaneous
canSAR (ICR)EPHX3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPHX3
EVEXEPHX3
GoPubMedEPHX3
iHOPEPHX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:04:50 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.