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EPOP (elongin BC and polycomb repressive complex 2 associated protein)

Identity

Other aliasC17orf96
PRR28
HGNC (Hugo) EPOP
LocusID (NCBI) 100170841
Atlas_Id 78631
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38671706 and ends at 38674934 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EPOP   34493
Cards
Entrez_Gene (NCBI)EPOP  100170841  elongin BC and polycomb repressive complex 2 associated protein
AliasesC17orf96; PRR28
GeneCards (Weizmann)EPOP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:38671706-38674934 [Contig_View]  EPOP [Vega]
TCGA cBioPortalEPOP
AceView (NCBI)EPOP
Genatlas (Paris)EPOP
WikiGenes100170841
SOURCE (Princeton)EPOP
Genetics Home Reference (NIH)EPOP
Genomic and cartography
GoldenPath hg38 (UCSC)EPOP  -     chr17:38671706-38674934 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EPOP  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblEPOP - 17q12 [CytoView hg19]  EPOP - 17q12 [CytoView hg38]
Mapping of homologs : NCBIEPOP [Mapview hg19]  EPOP [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001130677
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)EPOP
Cluster EST : UnigeneHs.445574 [ NCBI ]
CGAP (NCI)Hs.445574
Gene ExpressionEPOP [ NCBI-GEO ]   EPOP [ EBI - ARRAY_EXPRESS ]   EPOP [ SEEK ]   EPOP [ MEM ]
Gene Expression Viewer (FireBrowse)EPOP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100170841
GTEX Portal (Tissue expression)EPOP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHQ4
Splice isoforms : SwissVarA6NHQ4
PhosPhoSitePlusA6NHQ4
Domains : Interpro (EBI)DUF4584   
Domain families : Pfam (Sanger)DUF4584 (PF15223)   
Domain families : Pfam (NCBI)pfam15223   
Conserved Domain (NCBI)EPOP
DMDM Disease mutations100170841
Blocks (Seattle)EPOP
SuperfamilyA6NHQ4
Peptide AtlasA6NHQ4
IPIIPI00246649   
Protein Interaction databases
DIP (DOE-UCLA)A6NHQ4
IntAct (EBI)A6NHQ4
BioGRIDEPOP
STRING (EMBL)EPOP
ZODIACEPOP
Ontologies - Pathways
QuickGOA6NHQ4
Ontology : AmiGOchromatin binding  chromosome  regulation of transcription from RNA polymerase II promoter  ESC/E(Z) complex  histone H2B conserved C-terminal lysine deubiquitination  neuron fate commitment  stem cell differentiation  elongin complex  
Ontology : EGO-EBIchromatin binding  chromosome  regulation of transcription from RNA polymerase II promoter  ESC/E(Z) complex  histone H2B conserved C-terminal lysine deubiquitination  neuron fate commitment  stem cell differentiation  elongin complex  
NDEx NetworkEPOP
Atlas of Cancer Signalling NetworkEPOP
Wikipedia pathwaysEPOP
Orthology - Evolution
OrthoDB100170841
Phylogenetic Trees/Animal Genes : TreeFamEPOP
HOVERGENA6NHQ4
HOGENOMA6NHQ4
Homologs : HomoloGeneEPOP
Homology/Alignments : Family Browser (UCSC)EPOP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEPOP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EPOP
dbVarEPOP
ClinVarEPOP
1000_GenomesEPOP 
Exome Variant ServerEPOP
ExAC (Exome Aggregation Consortium)EPOP (select the gene name)
Genetic variants : HAPMAP100170841
Genomic Variants (DGV)EPOP [DGVbeta]
DECIPHEREPOP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEPOP 
Mutations
ICGC Data PortalEPOP 
TCGA Data PortalEPOP 
Broad Tumor PortalEPOP
OASIS PortalEPOP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEPOP
BioMutasearch EPOP
DgiDB (Drug Gene Interaction Database)EPOP
DoCM (Curated mutations)EPOP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EPOP (select a term)
intoGenEPOP
Cancer3DEPOP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEPOP
Genetic Testing Registry EPOP
NextProtA6NHQ4 [Medical]
TSGene100170841
GENETestsEPOP
Target ValidationEPOP
Huge Navigator EPOP [HugePedia]
snp3D : Map Gene to Disease100170841
BioCentury BCIQEPOP
ClinGenEPOP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100170841
Chemical/Pharm GKB GenePA162378581
Clinical trialEPOP
Miscellaneous
canSAR (ICR)EPOP (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPOP
EVEXEPOP
GoPubMedEPOP
iHOPEPOP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:07:11 CEST 2017

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