Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EPYC (epiphycan)

Identity

Alias_namesDSPG3
dermatan sulphate proteoglycan 3
dermatan sulfate proteoglycan 3
Alias_symbol (synonym)Pg-Lb
SLRR3B
Other aliasPGLB
HGNC (Hugo) EPYC
LocusID (NCBI) 1833
Atlas_Id 54288
Location 12q21.33  [Link to chromosome band 12q21]
Location_base_pair Starts at 90963679 and ends at 91005026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
UHRF1BP1 (6p21.31) / EPYC (12q21.33)UHRF1BP1 6p21.31 / EPYC 12q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EPYC   3053
Cards
Entrez_Gene (NCBI)EPYC  1833  epiphycan
AliasesDSPG3; PGLB; Pg-Lb; SLRR3B
GeneCards (Weizmann)EPYC
Ensembl hg19 (Hinxton)ENSG00000083782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083782 [Gene_View]  chr12:90963679-91005026 [Contig_View]  EPYC [Vega]
ICGC DataPortalENSG00000083782
TCGA cBioPortalEPYC
AceView (NCBI)EPYC
Genatlas (Paris)EPYC
WikiGenes1833
SOURCE (Princeton)EPYC
Genetics Home Reference (NIH)EPYC
Genomic and cartography
GoldenPath hg38 (UCSC)EPYC  -     chr12:90963679-91005026 -  12q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EPYC  -     12q21.33   [Description]    (hg19-Feb_2009)
EnsemblEPYC - 12q21.33 [CytoView hg19]  EPYC - 12q21.33 [CytoView hg38]
Mapping of homologs : NCBIEPYC [Mapview hg19]  EPYC [Mapview hg38]
OMIM601657   
Gene and transcription
Genbank (Entrez)AK290642 BC030958 BQ007792 HQ257949 KM111190
RefSeq transcript (Entrez)NM_004950
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EPYC
Cluster EST : UnigeneHs.435680 [ NCBI ]
CGAP (NCI)Hs.435680
Alternative Splicing GalleryENSG00000083782
Gene ExpressionEPYC [ NCBI-GEO ]   EPYC [ EBI - ARRAY_EXPRESS ]   EPYC [ SEEK ]   EPYC [ MEM ]
Gene Expression Viewer (FireBrowse)EPYC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1833
GTEX Portal (Tissue expression)EPYC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99645   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99645  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99645
Splice isoforms : SwissVarQ99645
PhosPhoSitePlusQ99645
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Epiphycan    L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)EPYC
DMDM Disease mutations1833
Blocks (Seattle)EPYC
SuperfamilyQ99645
Human Protein AtlasENSG00000083782
Peptide AtlasQ99645
HPRD15988
IPIIPI00007444   IPI01021412   
Protein Interaction databases
DIP (DOE-UCLA)Q99645
IntAct (EBI)Q99645
FunCoupENSG00000083782
BioGRIDEPYC
STRING (EMBL)EPYC
ZODIACEPYC
Ontologies - Pathways
QuickGOQ99645
Ontology : AmiGOglycosaminoglycan binding  proteinaceous extracellular matrix  extracellular space  axonogenesis  female pregnancy  
Ontology : EGO-EBIglycosaminoglycan binding  proteinaceous extracellular matrix  extracellular space  axonogenesis  female pregnancy  
Pathways : BIOCARTASmall Leucine-rich Proteoglycan (SLRP) molecules [Genes]   
NDEx NetworkEPYC
Atlas of Cancer Signalling NetworkEPYC
Wikipedia pathwaysEPYC
Orthology - Evolution
OrthoDB1833
GeneTree (enSembl)ENSG00000083782
Phylogenetic Trees/Animal Genes : TreeFamEPYC
HOVERGENQ99645
HOGENOMQ99645
Homologs : HomoloGeneEPYC
Homology/Alignments : Family Browser (UCSC)EPYC
Gene fusions - Rearrangements
Fusion : MitelmanUHRF1BP1/EPYC [6p21.31/12q21.33]  [t(6;12)(p21;q21)]  
Fusion: TCGAUHRF1BP1 6p21.31 EPYC 12q21.33 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEPYC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EPYC
dbVarEPYC
ClinVarEPYC
1000_GenomesEPYC 
Exome Variant ServerEPYC
ExAC (Exome Aggregation Consortium)EPYC (select the gene name)
Genetic variants : HAPMAP1833
Genomic Variants (DGV)EPYC [DGVbeta]
DECIPHEREPYC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEPYC 
Mutations
ICGC Data PortalEPYC 
TCGA Data PortalEPYC 
Broad Tumor PortalEPYC
OASIS PortalEPYC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEPYC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEPYC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EPYC
DgiDB (Drug Gene Interaction Database)EPYC
DoCM (Curated mutations)EPYC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EPYC (select a term)
intoGenEPYC
Cancer3DEPYC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601657   
Orphanet
MedgenEPYC
Genetic Testing Registry EPYC
NextProtQ99645 [Medical]
TSGene1833
GENETestsEPYC
Target ValidationEPYC
Huge Navigator EPYC [HugePedia]
snp3D : Map Gene to Disease1833
BioCentury BCIQEPYC
ClinGenEPYC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1833
Chemical/Pharm GKB GenePA162385144
Clinical trialEPYC
Miscellaneous
canSAR (ICR)EPYC (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEPYC
EVEXEPYC
GoPubMedEPYC
iHOPEPYC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:52:42 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.