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EQTN (equatorin)

Identity

Alias_namesC9orf11
chromosome 9 open reading frame 11
equatorin
equatorin, sperm acrosome associated
Alias_symbol (synonym)AFAF
SPACA8
equatorin
Other alias
HGNC (Hugo) EQTN
LocusID (NCBI) 54586
Atlas_Id 56055
Location 9p21.2  [Link to chromosome band 9p21]
Location_base_pair Starts at 27284656 and ends at 27297139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EQTN   1359
Cards
Entrez_Gene (NCBI)EQTN  54586  equatorin
AliasesAFAF; C9orf11; SPACA8
GeneCards (Weizmann)EQTN
Ensembl hg19 (Hinxton)ENSG00000120160 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120160 [Gene_View]  chr9:27284656-27297139 [Contig_View]  EQTN [Vega]
ICGC DataPortalENSG00000120160
TCGA cBioPortalEQTN
AceView (NCBI)EQTN
Genatlas (Paris)EQTN
WikiGenes54586
SOURCE (Princeton)EQTN
Genetics Home Reference (NIH)EQTN
Genomic and cartography
GoldenPath hg38 (UCSC)EQTN  -     chr9:27284656-27297139 -  9p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EQTN  -     9p21.2   [Description]    (hg19-Feb_2009)
EnsemblEQTN - 9p21.2 [CytoView hg19]  EQTN - 9p21.2 [CytoView hg38]
Mapping of homologs : NCBIEQTN [Mapview hg19]  EQTN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ278482 BC014307 BC137351 BC137352 BC144602
RefSeq transcript (Entrez)NM_001161585 NM_020641
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EQTN
Cluster EST : UnigeneHs.163070 [ NCBI ]
CGAP (NCI)Hs.163070
Alternative Splicing GalleryENSG00000120160
Gene ExpressionEQTN [ NCBI-GEO ]   EQTN [ EBI - ARRAY_EXPRESS ]   EQTN [ SEEK ]   EQTN [ MEM ]
Gene Expression Viewer (FireBrowse)EQTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54586
GTEX Portal (Tissue expression)EQTN
Human Protein AtlasENSG00000120160-EQTN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQ60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQ60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQ60
Splice isoforms : SwissVarQ9NQ60
PhosPhoSitePlusQ9NQ60
Domains : Interpro (EBI)Eqtn/Afaf   
Domain families : Pfam (Sanger)Afaf (PF15339)   
Domain families : Pfam (NCBI)pfam15339   
Conserved Domain (NCBI)EQTN
DMDM Disease mutations54586
Blocks (Seattle)EQTN
SuperfamilyQ9NQ60
Human Protein Atlas [tissue]ENSG00000120160-EQTN [tissue]
Peptide AtlasQ9NQ60
HPRD12932
IPIIPI00299475   IPI00642490   IPI00922454   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQ60
IntAct (EBI)Q9NQ60
FunCoupENSG00000120160
BioGRIDEQTN
STRING (EMBL)EQTN
ZODIACEQTN
Ontologies - Pathways
QuickGOQ9NQ60
Ontology : AmiGOinner acrosomal membrane  outer acrosomal membrane  nucleus  early endosome  plasma membrane  endocytosis  fusion of sperm to egg plasma membrane  integral component of membrane  acrosomal vesicle exocytosis  
Ontology : EGO-EBIinner acrosomal membrane  outer acrosomal membrane  nucleus  early endosome  plasma membrane  endocytosis  fusion of sperm to egg plasma membrane  integral component of membrane  acrosomal vesicle exocytosis  
NDEx NetworkEQTN
Atlas of Cancer Signalling NetworkEQTN
Wikipedia pathwaysEQTN
Orthology - Evolution
OrthoDB54586
GeneTree (enSembl)ENSG00000120160
Phylogenetic Trees/Animal Genes : TreeFamEQTN
HOVERGENQ9NQ60
HOGENOMQ9NQ60
Homologs : HomoloGeneEQTN
Homology/Alignments : Family Browser (UCSC)EQTN
Gene fusions - Rearrangements
Tumor Fusion PortalEQTN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEQTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EQTN
dbVarEQTN
ClinVarEQTN
1000_GenomesEQTN 
Exome Variant ServerEQTN
ExAC (Exome Aggregation Consortium)ENSG00000120160
GNOMAD BrowserENSG00000120160
Genetic variants : HAPMAP54586
Genomic Variants (DGV)EQTN [DGVbeta]
DECIPHEREQTN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEQTN 
Mutations
ICGC Data PortalEQTN 
TCGA Data PortalEQTN 
Broad Tumor PortalEQTN
OASIS PortalEQTN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEQTN
BioMutasearch EQTN
DgiDB (Drug GEne I~tåraction Database)EQTN
DoCM (Curated mutations)EQTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EQTN (select a term)
intoGenEQTN
Cancer3DEQTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETEQTN
MedgenEQTN
Genetic Testing Registry EQTN
NextProtQ9NQ60 [Medical]
TSGene54586
GENETestsEQTN
Target ValidationEQTN
Huge Navigator EQTN [HugePedia]
snp3D : Map Gene to Disease54586
BioCentury BCIQEQTN
ClinGenEQTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54586
Chemical/Pharm GKB GenePA25969
Clinical trialEQTN
Miscellaneous
canSAR (ICR)EQTN (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEQTN
EVEXEQTN
GoPubMedEQTN
iHOPEQTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 14:12:12 CET 2017

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