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ERC2-IT1 (ERC2 intronic transcript 1)

Identity

Alias_namesC1orf1
C3orf51
chromosome 1 open reading frame 1
chromosome 3 open reading frame 51
ERC2 intronic transcript 1 (non-protein coding)
Alias_symbol (synonym)Po42
Other alias
HGNC (Hugo) ERC2-IT1
LocusID (NCBI) 711
Atlas_Id 869
Location 3p14.3  [Link to chromosome band 3p14]
Location_base_pair Starts at 55657211 and ends at 55659469 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ERC2-IT1   1229
Cards
Entrez_Gene (NCBI)ERC2-IT1  711  ERC2 intronic transcript 1
AliasesC1orf1; C3orf51; Po42
GeneCards (Weizmann)ERC2-IT1
Ensembl hg19 (Hinxton)ENSG00000281708 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281708 [Gene_View]  chr3:55657211-55659469 [Contig_View]  ERC2-IT1 [Vega]
ICGC DataPortalENSG00000281708
TCGA cBioPortalERC2-IT1
AceView (NCBI)ERC2-IT1
Genatlas (Paris)ERC2-IT1
WikiGenes711
SOURCE (Princeton)ERC2-IT1
Genetics Home Reference (NIH)ERC2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)ERC2-IT1  -     chr3:55657211-55659469 -  3p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ERC2-IT1  -     3p14.3   [Description]    (hg19-Feb_2009)
EnsemblERC2-IT1 - 3p14.3 [CytoView hg19]  ERC2-IT1 - 3p14.3 [CytoView hg38]
Mapping of homologs : NCBIERC2-IT1 [Mapview hg19]  ERC2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC069104 BC069453 BC074933 BC074934 U88965
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ERC2-IT1
Cluster EST : UnigeneHs.667161 [ NCBI ]
CGAP (NCI)Hs.667161
Alternative Splicing GalleryENSG00000281708
Gene ExpressionERC2-IT1 [ NCBI-GEO ]   ERC2-IT1 [ EBI - ARRAY_EXPRESS ]   ERC2-IT1 [ SEEK ]   ERC2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ERC2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)711
GTEX Portal (Tissue expression)ERC2-IT1
Human Protein AtlasENSG00000281708-ERC2-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO76042   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO76042  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO76042
Splice isoforms : SwissVarO76042
PhosPhoSitePlusO76042
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ERC2-IT1
DMDM Disease mutations711
Blocks (Seattle)ERC2-IT1
SuperfamilyO76042
Human Protein Atlas [tissue]ENSG00000281708-ERC2-IT1 [tissue]
Peptide AtlasO76042
HPRD04924
IPIIPI00008745   
Protein Interaction databases
DIP (DOE-UCLA)O76042
IntAct (EBI)O76042
FunCoupENSG00000281708
BioGRIDERC2-IT1
STRING (EMBL)ERC2-IT1
ZODIACERC2-IT1
Ontologies - Pathways
QuickGOO76042
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkERC2-IT1
Atlas of Cancer Signalling NetworkERC2-IT1
Wikipedia pathwaysERC2-IT1
Orthology - Evolution
OrthoDB711
GeneTree (enSembl)ENSG00000281708
Phylogenetic Trees/Animal Genes : TreeFamERC2-IT1
HOVERGENO76042
HOGENOMO76042
Homologs : HomoloGeneERC2-IT1
Homology/Alignments : Family Browser (UCSC)ERC2-IT1
Gene fusions - Rearrangements
Tumor Fusion PortalERC2-IT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerERC2-IT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ERC2-IT1
dbVarERC2-IT1
ClinVarERC2-IT1
1000_GenomesERC2-IT1 
Exome Variant ServerERC2-IT1
ExAC (Exome Aggregation Consortium)ENSG00000281708
GNOMAD BrowserENSG00000281708
Genetic variants : HAPMAP711
Genomic Variants (DGV)ERC2-IT1 [DGVbeta]
DECIPHERERC2-IT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisERC2-IT1 
Mutations
ICGC Data PortalERC2-IT1 
TCGA Data PortalERC2-IT1 
Broad Tumor PortalERC2-IT1
OASIS PortalERC2-IT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDERC2-IT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ERC2-IT1
DgiDB (Drug Gene Interaction Database)ERC2-IT1
DoCM (Curated mutations)ERC2-IT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ERC2-IT1 (select a term)
intoGenERC2-IT1
Cancer3DERC2-IT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETERC2-IT1
MedgenERC2-IT1
Genetic Testing Registry ERC2-IT1
NextProtO76042 [Medical]
TSGene711
GENETestsERC2-IT1
Target ValidationERC2-IT1
Huge Navigator ERC2-IT1 [HugePedia]
snp3D : Map Gene to Disease711
BioCentury BCIQERC2-IT1
ClinGenERC2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD711
Chemical/Pharm GKB GenePA25600
Clinical trialERC2-IT1
Miscellaneous
canSAR (ICR)ERC2-IT1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineERC2-IT1
EVEXERC2-IT1
GoPubMedERC2-IT1
iHOPERC2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:12:14 CET 2017

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